Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3963

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3961 and Psest_3962 are separated by 117 nucleotidesPsest_3962 and Psest_3963 are separated by 169 nucleotidesPsest_3963 and Psest_3964 are separated by 87 nucleotides Psest_3961: Psest_3961 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 4,127,675 to 4,128,241 _3961 Psest_3962: Psest_3962 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 4,128,359 to 4,129,039 _3962 Psest_3963: Psest_3963 - PAS domain S-box, at 4,129,209 to 4,131,770 _3963 Psest_3964: Psest_3964 - formate dehydrogenase family accessory protein FdhD, at 4,131,858 to 4,132,706 _3964 Position (kb) 4129 4130 4131 4132Strain fitness (log2 ratio) -2 -1 0 1 2at 4128.221 kb on + strandat 4128.221 kb on + strandat 4128.221 kb on + strandat 4128.221 kb on + strandat 4128.221 kb on + strandat 4128.222 kb on - strandat 4128.222 kb on - strandat 4128.222 kb on - strandat 4128.222 kb on - strandat 4128.222 kb on - strandat 4128.222 kb on - strandat 4128.222 kb on - strandat 4128.222 kb on - strandat 4128.222 kb on - strandat 4128.273 kb on + strandat 4128.273 kb on + strandat 4128.284 kb on - strandat 4128.573 kb on - strand, within Psest_3962at 4128.704 kb on - strand, within Psest_3962at 4129.072 kb on + strandat 4129.072 kb on + strandat 4129.072 kb on + strandat 4129.072 kb on + strandat 4129.072 kb on + strandat 4129.072 kb on + strandat 4129.073 kb on - strandat 4129.073 kb on - strandat 4129.073 kb on - strandat 4129.073 kb on - strandat 4129.073 kb on - strandat 4129.073 kb on - strandat 4129.073 kb on - strandat 4129.077 kb on + strandat 4129.077 kb on + strandat 4129.077 kb on + strandat 4129.078 kb on - strandat 4129.078 kb on - strandat 4129.078 kb on - strandat 4129.078 kb on - strandat 4129.176 kb on + strandat 4129.177 kb on - strandat 4129.198 kb on + strandat 4129.199 kb on - strandat 4129.219 kb on + strandat 4129.220 kb on - strandat 4129.220 kb on - strandat 4129.404 kb on + strandat 4129.404 kb on + strandat 4129.404 kb on + strandat 4129.404 kb on + strandat 4129.405 kb on - strandat 4129.540 kb on + strand, within Psest_3963at 4129.719 kb on + strand, within Psest_3963at 4129.719 kb on + strand, within Psest_3963at 4129.719 kb on + strand, within Psest_3963at 4129.719 kb on + strand, within Psest_3963at 4129.719 kb on + strand, within Psest_3963at 4129.719 kb on + strand, within Psest_3963at 4129.720 kb on - strand, within Psest_3963at 4129.720 kb on - strand, within Psest_3963at 4129.720 kb on - strand, within Psest_3963at 4129.720 kb on - strand, within Psest_3963at 4129.829 kb on - strand, within Psest_3963at 4129.847 kb on - strand, within Psest_3963at 4130.190 kb on + strand, within Psest_3963at 4130.230 kb on - strand, within Psest_3963at 4130.232 kb on + strand, within Psest_3963at 4130.232 kb on + strand, within Psest_3963at 4130.233 kb on - strand, within Psest_3963at 4130.233 kb on - strand, within Psest_3963at 4130.233 kb on - strand, within Psest_3963at 4130.370 kb on + strand, within Psest_3963at 4130.371 kb on - strand, within Psest_3963at 4130.371 kb on - strand, within Psest_3963at 4130.371 kb on - strand, within Psest_3963at 4130.416 kb on - strand, within Psest_3963at 4130.477 kb on - strand, within Psest_3963at 4130.571 kb on + strand, within Psest_3963at 4130.572 kb on - strand, within Psest_3963at 4130.704 kb on + strand, within Psest_3963at 4130.705 kb on - strand, within Psest_3963at 4130.733 kb on + strand, within Psest_3963at 4130.733 kb on + strand, within Psest_3963at 4130.733 kb on + strand, within Psest_3963at 4130.733 kb on + strand, within Psest_3963at 4130.734 kb on - strand, within Psest_3963at 4130.734 kb on - strand, within Psest_3963at 4130.734 kb on - strand, within Psest_3963at 4130.734 kb on - strand, within Psest_3963at 4130.857 kb on + strand, within Psest_3963at 4130.857 kb on + strand, within Psest_3963at 4130.858 kb on - strand, within Psest_3963at 4131.082 kb on - strand, within Psest_3963at 4131.120 kb on + strand, within Psest_3963at 4131.170 kb on - strand, within Psest_3963at 4131.276 kb on - strand, within Psest_3963at 4131.276 kb on - strand, within Psest_3963at 4131.321 kb on + strand, within Psest_3963at 4131.321 kb on + strand, within Psest_3963at 4131.321 kb on + strand, within Psest_3963at 4131.321 kb on + strand, within Psest_3963at 4131.322 kb on - strand, within Psest_3963at 4131.333 kb on + strand, within Psest_3963at 4131.333 kb on + strand, within Psest_3963at 4131.333 kb on + strand, within Psest_3963at 4131.333 kb on + strand, within Psest_3963at 4131.334 kb on - strand, within Psest_3963at 4131.334 kb on - strand, within Psest_3963at 4131.511 kb on + strand, within Psest_3963at 4131.543 kb on - strandat 4131.646 kb on - strandat 4131.796 kb on - strandat 4131.930 kb on + strandat 4132.005 kb on + strand, within Psest_3964at 4132.005 kb on + strand, within Psest_3964at 4132.005 kb on + strand, within Psest_3964at 4132.005 kb on + strand, within Psest_3964at 4132.005 kb on + strand, within Psest_3964at 4132.005 kb on + strand, within Psest_3964at 4132.005 kb on + strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.006 kb on - strand, within Psest_3964at 4132.007 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.113 kb on + strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.114 kb on - strand, within Psest_3964at 4132.325 kb on - strand, within Psest_3964at 4132.325 kb on - strand, within Psest_3964at 4132.334 kb on + strand, within Psest_3964at 4132.443 kb on - strand, within Psest_3964at 4132.550 kb on - strand, within Psest_3964at 4132.550 kb on - strand, within Psest_3964at 4132.550 kb on - strand, within Psest_3964at 4132.550 kb on - strand, within Psest_3964at 4132.671 kb on + strandat 4132.671 kb on + strandat 4132.671 kb on + strandat 4132.671 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.730 kb on + strandat 4132.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,128,221 + +0.9
4,128,221 + +0.6
4,128,221 + +0.1
4,128,221 + -0.1
4,128,221 + -0.3
4,128,222 - -0.7
4,128,222 - +0.1
4,128,222 - +0.7
4,128,222 - +0.3
4,128,222 - -0.4
4,128,222 - +0.2
4,128,222 - +0.3
4,128,222 - -0.6
4,128,222 - +0.0
4,128,273 + -1.2
4,128,273 + +0.2
4,128,284 - +0.2
4,128,573 - Psest_3962 0.31 +0.1
4,128,704 - Psest_3962 0.51 -0.6
4,129,072 + +0.9
4,129,072 + +0.0
4,129,072 + +1.9
4,129,072 + +1.0
4,129,072 + +0.5
4,129,072 + +1.1
4,129,073 - +1.7
4,129,073 - +0.0
4,129,073 - +1.2
4,129,073 - +0.1
4,129,073 - +0.5
4,129,073 - -0.8
4,129,073 - -0.3
4,129,077 + -0.5
4,129,077 + +1.2
4,129,077 + +1.0
4,129,078 - +0.3
4,129,078 - +0.8
4,129,078 - -0.2
4,129,078 - +1.3
4,129,176 + +1.6
4,129,177 - +0.5
4,129,198 + +0.4
4,129,199 - +0.6
4,129,219 + +1.0
4,129,220 - -0.2
4,129,220 - +0.9
4,129,404 + +0.9
4,129,404 + +1.1
4,129,404 + +1.5
4,129,404 + +0.9
4,129,405 - +0.4
4,129,540 + Psest_3963 0.13 +0.9
4,129,719 + Psest_3963 0.20 +0.9
4,129,719 + Psest_3963 0.20 +1.3
4,129,719 + Psest_3963 0.20 +0.5
4,129,719 + Psest_3963 0.20 +0.5
4,129,719 + Psest_3963 0.20 +0.2
4,129,719 + Psest_3963 0.20 +0.9
4,129,720 - Psest_3963 0.20 +1.1
4,129,720 - Psest_3963 0.20 +1.2
4,129,720 - Psest_3963 0.20 +1.2
4,129,720 - Psest_3963 0.20 +2.2
4,129,829 - Psest_3963 0.24 +0.6
4,129,847 - Psest_3963 0.25 +1.3
4,130,190 + Psest_3963 0.38 +0.9
4,130,230 - Psest_3963 0.40 +0.8
4,130,232 + Psest_3963 0.40 +1.2
4,130,232 + Psest_3963 0.40 +0.7
4,130,233 - Psest_3963 0.40 +0.4
4,130,233 - Psest_3963 0.40 +0.8
4,130,233 - Psest_3963 0.40 -0.7
4,130,370 + Psest_3963 0.45 +1.0
4,130,371 - Psest_3963 0.45 +0.3
4,130,371 - Psest_3963 0.45 +1.0
4,130,371 - Psest_3963 0.45 +1.3
4,130,416 - Psest_3963 0.47 +1.1
4,130,477 - Psest_3963 0.49 +0.2
4,130,571 + Psest_3963 0.53 +1.0
4,130,572 - Psest_3963 0.53 +1.6
4,130,704 + Psest_3963 0.58 +0.4
4,130,705 - Psest_3963 0.58 +0.3
4,130,733 + Psest_3963 0.59 +0.8
4,130,733 + Psest_3963 0.59 +0.9
4,130,733 + Psest_3963 0.59 +0.5
4,130,733 + Psest_3963 0.59 +1.6
4,130,734 - Psest_3963 0.60 +0.1
4,130,734 - Psest_3963 0.60 +0.5
4,130,734 - Psest_3963 0.60 +0.7
4,130,734 - Psest_3963 0.60 +0.8
4,130,857 + Psest_3963 0.64 +0.8
4,130,857 + Psest_3963 0.64 +0.5
4,130,858 - Psest_3963 0.64 -0.1
4,131,082 - Psest_3963 0.73 +0.3
4,131,120 + Psest_3963 0.75 +1.4
4,131,170 - Psest_3963 0.77 +1.5
4,131,276 - Psest_3963 0.81 +1.4
4,131,276 - Psest_3963 0.81 +0.4
4,131,321 + Psest_3963 0.82 +1.0
4,131,321 + Psest_3963 0.82 +0.3
4,131,321 + Psest_3963 0.82 +1.3
4,131,321 + Psest_3963 0.82 +1.1
4,131,322 - Psest_3963 0.82 +1.2
4,131,333 + Psest_3963 0.83 +0.5
4,131,333 + Psest_3963 0.83 +1.0
4,131,333 + Psest_3963 0.83 +0.3
4,131,333 + Psest_3963 0.83 +0.3
4,131,334 - Psest_3963 0.83 +0.1
4,131,334 - Psest_3963 0.83 +0.2
4,131,511 + Psest_3963 0.90 +0.6
4,131,543 - +0.6
4,131,646 - +0.7
4,131,796 - +1.3
4,131,930 + +0.4
4,132,005 + Psest_3964 0.17 +0.1
4,132,005 + Psest_3964 0.17 +0.5
4,132,005 + Psest_3964 0.17 +0.1
4,132,005 + Psest_3964 0.17 -0.5
4,132,005 + Psest_3964 0.17 +0.3
4,132,005 + Psest_3964 0.17 +0.0
4,132,005 + Psest_3964 0.17 -1.0
4,132,006 - Psest_3964 0.17 +1.3
4,132,006 - Psest_3964 0.17 -1.1
4,132,006 - Psest_3964 0.17 -0.4
4,132,006 - Psest_3964 0.17 +1.1
4,132,006 - Psest_3964 0.17 +1.3
4,132,006 - Psest_3964 0.17 -0.1
4,132,006 - Psest_3964 0.17 -0.2
4,132,006 - Psest_3964 0.17 +0.3
4,132,006 - Psest_3964 0.17 +0.6
4,132,006 - Psest_3964 0.17 -0.1
4,132,007 + Psest_3964 0.18 -0.4
4,132,113 + Psest_3964 0.30 -2.5
4,132,113 + Psest_3964 0.30 -0.1
4,132,113 + Psest_3964 0.30 +0.3
4,132,113 + Psest_3964 0.30 +0.8
4,132,113 + Psest_3964 0.30 +1.0
4,132,113 + Psest_3964 0.30 +0.6
4,132,113 + Psest_3964 0.30 +0.7
4,132,113 + Psest_3964 0.30 -0.4
4,132,113 + Psest_3964 0.30 -2.0
4,132,113 + Psest_3964 0.30 -0.3
4,132,113 + Psest_3964 0.30 +0.6
4,132,113 + Psest_3964 0.30 +0.4
4,132,113 + Psest_3964 0.30 -0.9
4,132,113 + Psest_3964 0.30 +0.2
4,132,113 + Psest_3964 0.30 +0.7
4,132,113 + Psest_3964 0.30 +1.2
4,132,113 + Psest_3964 0.30 -0.4
4,132,113 + Psest_3964 0.30 -2.2
4,132,113 + Psest_3964 0.30 +0.8
4,132,113 + Psest_3964 0.30 -0.9
4,132,113 + Psest_3964 0.30 +0.3
4,132,113 + Psest_3964 0.30 +0.3
4,132,113 + Psest_3964 0.30 -0.2
4,132,113 + Psest_3964 0.30 +0.7
4,132,114 - Psest_3964 0.30 -0.3
4,132,114 - Psest_3964 0.30 -0.3
4,132,114 - Psest_3964 0.30 +1.0
4,132,114 - Psest_3964 0.30 -0.5
4,132,114 - Psest_3964 0.30 -1.0
4,132,114 - Psest_3964 0.30 +1.3
4,132,114 - Psest_3964 0.30 +0.5
4,132,114 - Psest_3964 0.30 -0.5
4,132,114 - Psest_3964 0.30 +0.3
4,132,114 - Psest_3964 0.30 +0.2
4,132,114 - Psest_3964 0.30 -2.1
4,132,114 - Psest_3964 0.30 -0.4
4,132,114 - Psest_3964 0.30 -0.0
4,132,114 - Psest_3964 0.30 +0.2
4,132,114 - Psest_3964 0.30 -0.6
4,132,114 - Psest_3964 0.30 +0.5
4,132,114 - Psest_3964 0.30 +1.0
4,132,114 - Psest_3964 0.30 -0.2
4,132,114 - Psest_3964 0.30 +0.9
4,132,114 - Psest_3964 0.30 -0.1
4,132,114 - Psest_3964 0.30 +0.1
4,132,325 - Psest_3964 0.55 +0.1
4,132,325 - Psest_3964 0.55 +0.1
4,132,334 + Psest_3964 0.56 -0.6
4,132,443 - Psest_3964 0.69 -0.7
4,132,550 - Psest_3964 0.82 -0.3
4,132,550 - Psest_3964 0.82 +2.6
4,132,550 - Psest_3964 0.82 +1.2
4,132,550 - Psest_3964 0.82 +0.5
4,132,671 + -0.2
4,132,671 + +0.9
4,132,671 + -0.5
4,132,671 + +0.1
4,132,730 + -0.8
4,132,730 + +0.1
4,132,730 + +0.2
4,132,730 + +0.1
4,132,730 + -0.2
4,132,730 + +0.3
4,132,730 + -1.2
4,132,730 + -0.3
4,132,730 + +0.9
4,132,730 + -0.2
4,132,730 + -0.8
4,132,730 + +0.6
4,132,730 + +1.2
4,132,730 + +0.4
4,132,730 + -0.5
4,132,744 - +0.5

Or see this region's nucleotide sequence