Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3936

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3935 and Psest_3936 are separated by 137 nucleotidesPsest_3936 and Psest_3937 are separated by 90 nucleotides Psest_3935: Psest_3935 - oxidoreductase alpha (molybdopterin) subunit, at 4,106,281 to 4,108,653 _3935 Psest_3936: Psest_3936 - ATP-dependent protease HslVU, peptidase subunit, at 4,108,791 to 4,109,327 _3936 Psest_3937: Psest_3937 - ATP-dependent protease HslVU, ATPase subunit, at 4,109,418 to 4,110,761 _3937 Position (kb) 4108 4109 4110Strain fitness (log2 ratio) -1 0 1 2 3 4at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.801 kb on + strand, within Psest_3935at 4107.801 kb on + strand, within Psest_3935at 4107.802 kb on - strand, within Psest_3935at 4107.926 kb on + strand, within Psest_3935at 4107.926 kb on + strand, within Psest_3935at 4107.926 kb on + strand, within Psest_3935at 4107.926 kb on + strand, within Psest_3935at 4108.018 kb on + strand, within Psest_3935at 4108.019 kb on - strand, within Psest_3935at 4108.019 kb on - strand, within Psest_3935at 4108.229 kb on + strand, within Psest_3935at 4108.229 kb on + strand, within Psest_3935at 4108.229 kb on + strand, within Psest_3935at 4108.230 kb on - strand, within Psest_3935at 4108.230 kb on - strand, within Psest_3935at 4108.230 kb on - strand, within Psest_3935at 4108.279 kb on + strand, within Psest_3935at 4108.279 kb on + strand, within Psest_3935at 4108.280 kb on - strand, within Psest_3935at 4108.447 kb on + strandat 4108.447 kb on + strandat 4108.447 kb on + strandat 4108.447 kb on + strandat 4108.448 kb on - strandat 4108.448 kb on - strandat 4108.477 kb on + strandat 4108.683 kb on + strandat 4108.684 kb on - strandat 4108.742 kb on + strandat 4108.906 kb on - strand, within Psest_3936at 4108.906 kb on - strand, within Psest_3936at 4108.906 kb on - strand, within Psest_3936at 4108.906 kb on - strand, within Psest_3936at 4108.919 kb on - strand, within Psest_3936at 4108.919 kb on - strand, within Psest_3936at 4109.303 kb on - strandat 4109.303 kb on - strandat 4109.362 kb on + strandat 4109.363 kb on - strandat 4109.686 kb on - strand, within Psest_3937at 4110.216 kb on - strand, within Psest_3937

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,107,799 + Psest_3935 0.64 +2.1
4,107,799 + Psest_3935 0.64 -0.4
4,107,799 + Psest_3935 0.64 -1.7
4,107,799 + Psest_3935 0.64 -0.5
4,107,799 + Psest_3935 0.64 +1.7
4,107,799 + Psest_3935 0.64 -1.5
4,107,800 - Psest_3935 0.64 +0.3
4,107,800 - Psest_3935 0.64 +0.5
4,107,800 - Psest_3935 0.64 +0.3
4,107,800 - Psest_3935 0.64 -0.1
4,107,800 - Psest_3935 0.64 +3.9
4,107,800 - Psest_3935 0.64 +0.5
4,107,800 - Psest_3935 0.64 -0.5
4,107,800 - Psest_3935 0.64 +0.7
4,107,800 - Psest_3935 0.64 -0.9
4,107,800 - Psest_3935 0.64 +0.9
4,107,800 - Psest_3935 0.64 -0.0
4,107,800 - Psest_3935 0.64 +1.3
4,107,800 - Psest_3935 0.64 +1.7
4,107,800 - Psest_3935 0.64 +1.3
4,107,800 - Psest_3935 0.64 -0.3
4,107,800 - Psest_3935 0.64 -1.5
4,107,801 + Psest_3935 0.64 +0.2
4,107,801 + Psest_3935 0.64 +0.7
4,107,802 - Psest_3935 0.64 -0.1
4,107,926 + Psest_3935 0.69 +0.9
4,107,926 + Psest_3935 0.69 -0.0
4,107,926 + Psest_3935 0.69 -1.1
4,107,926 + Psest_3935 0.69 +2.3
4,108,018 + Psest_3935 0.73 +0.3
4,108,019 - Psest_3935 0.73 +0.0
4,108,019 - Psest_3935 0.73 +0.5
4,108,229 + Psest_3935 0.82 +0.5
4,108,229 + Psest_3935 0.82 -1.7
4,108,229 + Psest_3935 0.82 +0.3
4,108,230 - Psest_3935 0.82 +0.5
4,108,230 - Psest_3935 0.82 +0.3
4,108,230 - Psest_3935 0.82 +0.7
4,108,279 + Psest_3935 0.84 -0.7
4,108,279 + Psest_3935 0.84 -1.3
4,108,280 - Psest_3935 0.84 +0.8
4,108,447 + -0.3
4,108,447 + +0.0
4,108,447 + +0.3
4,108,447 + +0.8
4,108,448 - +0.1
4,108,448 - -0.8
4,108,477 + +2.3
4,108,683 + +0.7
4,108,684 - -0.7
4,108,742 + -0.3
4,108,906 - Psest_3936 0.21 +0.3
4,108,906 - Psest_3936 0.21 +0.0
4,108,906 - Psest_3936 0.21 +0.6
4,108,906 - Psest_3936 0.21 +0.9
4,108,919 - Psest_3936 0.24 +0.9
4,108,919 - Psest_3936 0.24 +0.9
4,109,303 - -0.2
4,109,303 - +0.2
4,109,362 + +1.2
4,109,363 - +0.9
4,109,686 - Psest_3937 0.20 +1.3
4,110,216 - Psest_3937 0.59 -0.2

Or see this region's nucleotide sequence