Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3735

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3734 and Psest_3735 are separated by 147 nucleotidesPsest_3735 and Psest_3736 are separated by 4 nucleotidesPsest_3736 and Psest_3737 are separated by 14 nucleotides Psest_3734: Psest_3734 - Uncharacterized protein involved in an early stage of isoprenoid biosynthesis, at 3,907,705 to 3,908,370 _3734 Psest_3735: Psest_3735 - uncharacterized domain 1, at 3,908,518 to 3,908,985 _3735 Psest_3736: Psest_3736 - Uncharacterized protein conserved in bacteria, at 3,908,990 to 3,909,445 _3736 Psest_3737: Psest_3737 - Putative threonine efflux protein, at 3,909,460 to 3,910,092 _3737 Position (kb) 3908 3909Strain fitness (log2 ratio) -2 -1 0 1at 3907.644 kb on - strandat 3907.644 kb on - strandat 3907.644 kb on - strandat 3907.644 kb on - strandat 3907.704 kb on + strandat 3907.704 kb on + strandat 3907.705 kb on - strandat 3907.747 kb on + strandat 3907.747 kb on + strandat 3907.748 kb on - strandat 3907.748 kb on - strandat 3907.765 kb on + strandat 3907.765 kb on + strandat 3907.765 kb on + strandat 3907.765 kb on + strandat 3907.765 kb on + strandat 3907.765 kb on + strandat 3907.765 kb on + strandat 3907.765 kb on + strandat 3907.766 kb on - strandat 3907.766 kb on - strandat 3907.766 kb on - strandat 3907.766 kb on - strandat 3907.766 kb on - strandat 3907.766 kb on - strandat 3907.766 kb on - strandat 3907.766 kb on - strandat 3907.766 kb on - strandat 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.284 kb on + strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.285 kb on - strand, within Psest_3734at 3908.326 kb on + strandat 3908.326 kb on + strandat 3908.326 kb on + strandat 3908.326 kb on + strandat 3908.326 kb on + strandat 3908.326 kb on + strandat 3908.326 kb on + strandat 3908.327 kb on - strandat 3908.839 kb on + strand, within Psest_3735at 3908.840 kb on - strand, within Psest_3735at 3908.958 kb on - strandat 3908.971 kb on + strandat 3908.971 kb on + strandat 3908.971 kb on + strandat 3908.972 kb on - strandat 3908.972 kb on - strandat 3908.972 kb on - strandat 3908.972 kb on - strandat 3908.972 kb on - strandat 3908.972 kb on - strandat 3908.972 kb on - strandat 3908.972 kb on - strandat 3909.305 kb on + strand, within Psest_3736at 3909.306 kb on - strand, within Psest_3736at 3909.306 kb on - strand, within Psest_3736at 3909.464 kb on - strandat 3909.464 kb on - strandat 3909.593 kb on + strand, within Psest_3737at 3909.593 kb on + strand, within Psest_3737at 3909.593 kb on + strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.594 kb on - strand, within Psest_3737at 3909.647 kb on + strand, within Psest_3737at 3909.648 kb on - strand, within Psest_3737at 3909.648 kb on - strand, within Psest_3737at 3909.974 kb on + strand, within Psest_3737

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,907,644 - -0.1
3,907,644 - +0.6
3,907,644 - +0.4
3,907,644 - -0.3
3,907,704 + -0.0
3,907,704 + +0.2
3,907,705 - +0.5
3,907,747 + -0.5
3,907,747 + -0.2
3,907,748 - -0.7
3,907,748 - -0.2
3,907,765 + +0.1
3,907,765 + +0.6
3,907,765 + +0.7
3,907,765 + +0.1
3,907,765 + -0.1
3,907,765 + +1.0
3,907,765 + +0.1
3,907,765 + +1.4
3,907,766 - +1.2
3,907,766 - +0.5
3,907,766 - -0.1
3,907,766 - -0.0
3,907,766 - +1.3
3,907,766 - +0.8
3,907,766 - -1.5
3,907,766 - +0.2
3,907,766 - +0.8
3,908,284 + Psest_3734 0.87 -1.1
3,908,284 + Psest_3734 0.87 +0.3
3,908,284 + Psest_3734 0.87 +0.0
3,908,284 + Psest_3734 0.87 -0.3
3,908,284 + Psest_3734 0.87 +0.2
3,908,284 + Psest_3734 0.87 +0.6
3,908,284 + Psest_3734 0.87 +0.5
3,908,284 + Psest_3734 0.87 -0.3
3,908,284 + Psest_3734 0.87 -0.0
3,908,284 + Psest_3734 0.87 +0.4
3,908,284 + Psest_3734 0.87 +0.3
3,908,284 + Psest_3734 0.87 +0.5
3,908,284 + Psest_3734 0.87 -0.6
3,908,284 + Psest_3734 0.87 +0.0
3,908,284 + Psest_3734 0.87 +0.8
3,908,285 - Psest_3734 0.87 +0.2
3,908,285 - Psest_3734 0.87 -0.2
3,908,285 - Psest_3734 0.87 +0.0
3,908,285 - Psest_3734 0.87 +0.6
3,908,285 - Psest_3734 0.87 +0.3
3,908,285 - Psest_3734 0.87 -0.0
3,908,285 - Psest_3734 0.87 +0.1
3,908,285 - Psest_3734 0.87 -1.1
3,908,285 - Psest_3734 0.87 -0.9
3,908,285 - Psest_3734 0.87 -0.7
3,908,285 - Psest_3734 0.87 +0.5
3,908,285 - Psest_3734 0.87 -0.1
3,908,285 - Psest_3734 0.87 -0.5
3,908,285 - Psest_3734 0.87 -0.5
3,908,285 - Psest_3734 0.87 +0.1
3,908,285 - Psest_3734 0.87 -0.1
3,908,285 - Psest_3734 0.87 +0.9
3,908,326 + -1.1
3,908,326 + +0.4
3,908,326 + +0.4
3,908,326 + +0.2
3,908,326 + +0.9
3,908,326 + +0.6
3,908,326 + +1.4
3,908,327 - +1.0
3,908,839 + Psest_3735 0.69 +1.7
3,908,840 - Psest_3735 0.69 +1.0
3,908,958 - -0.3
3,908,971 + +0.2
3,908,971 + -1.8
3,908,971 + +0.9
3,908,972 - -0.2
3,908,972 - -0.2
3,908,972 - -0.5
3,908,972 - +0.8
3,908,972 - -0.3
3,908,972 - +0.2
3,908,972 - +0.2
3,908,972 - +0.1
3,909,305 + Psest_3736 0.69 -0.0
3,909,306 - Psest_3736 0.69 +0.3
3,909,306 - Psest_3736 0.69 +0.4
3,909,464 - -0.3
3,909,464 - +0.2
3,909,593 + Psest_3737 0.21 +0.8
3,909,593 + Psest_3737 0.21 -0.3
3,909,593 + Psest_3737 0.21 -0.1
3,909,594 - Psest_3737 0.21 -1.0
3,909,594 - Psest_3737 0.21 +0.1
3,909,594 - Psest_3737 0.21 -0.8
3,909,594 - Psest_3737 0.21 +0.1
3,909,594 - Psest_3737 0.21 +0.7
3,909,594 - Psest_3737 0.21 -0.2
3,909,647 + Psest_3737 0.30 +0.0
3,909,648 - Psest_3737 0.30 -0.6
3,909,648 - Psest_3737 0.30 -0.2
3,909,974 + Psest_3737 0.81 +0.9

Or see this region's nucleotide sequence