Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3692

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3689 and Psest_3690 are separated by 12 nucleotidesPsest_3690 and Psest_3691 are separated by 49 nucleotidesPsest_3691 and Psest_3692 overlap by 4 nucleotidesPsest_3692 and Psest_3693 overlap by 4 nucleotidesPsest_3693 and Psest_3694 overlap by 4 nucleotides Psest_3689: Psest_3689 - Acyl carrier protein, at 3,854,159 to 3,854,422 _3689 Psest_3690: Psest_3690 - Acyl carrier protein, at 3,854,435 to 3,854,692 _3690 Psest_3691: Psest_3691 - Predicted membrane protein, at 3,854,742 to 3,855,317 _3691 Psest_3692: Psest_3692 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 3,855,314 to 3,856,990 _3692 Psest_3693: Psest_3693 - Glycosyltransferases involved in cell wall biogenesis, at 3,856,987 to 3,857,802 _3693 Psest_3694: Psest_3694 - Predicted acyltransferase, at 3,857,799 to 3,858,743 _3694 Position (kb) 3855 3856 3857Strain fitness (log2 ratio) -2 -1 0 1 2at 3854.531 kb on + strand, within Psest_3690at 3854.531 kb on + strand, within Psest_3690at 3854.532 kb on - strand, within Psest_3690at 3854.582 kb on - strand, within Psest_3690at 3854.649 kb on + strand, within Psest_3690at 3854.649 kb on + strand, within Psest_3690at 3854.649 kb on + strand, within Psest_3690at 3854.650 kb on - strand, within Psest_3690at 3854.650 kb on - strand, within Psest_3690at 3854.650 kb on - strand, within Psest_3690at 3854.650 kb on - strand, within Psest_3690at 3854.785 kb on + strandat 3854.785 kb on + strandat 3854.786 kb on - strandat 3854.835 kb on + strand, within Psest_3691at 3854.836 kb on - strand, within Psest_3691at 3854.978 kb on - strand, within Psest_3691at 3855.130 kb on - strand, within Psest_3691at 3855.131 kb on + strand, within Psest_3691at 3855.131 kb on + strand, within Psest_3691at 3855.131 kb on + strand, within Psest_3691at 3855.231 kb on + strand, within Psest_3691at 3855.232 kb on - strand, within Psest_3691at 3855.232 kb on - strand, within Psest_3691at 3855.232 kb on - strand, within Psest_3691at 3855.232 kb on - strand, within Psest_3691at 3855.232 kb on - strand, within Psest_3691at 3855.232 kb on - strand, within Psest_3691at 3855.232 kb on - strand, within Psest_3691at 3855.339 kb on + strandat 3855.339 kb on + strandat 3855.339 kb on + strandat 3855.340 kb on - strandat 3855.531 kb on + strand, within Psest_3692at 3855.531 kb on + strand, within Psest_3692at 3855.833 kb on + strand, within Psest_3692at 3855.834 kb on - strand, within Psest_3692at 3856.106 kb on + strand, within Psest_3692at 3856.107 kb on - strand, within Psest_3692at 3856.107 kb on - strand, within Psest_3692at 3856.424 kb on + strand, within Psest_3692at 3856.887 kb on + strandat 3856.888 kb on - strandat 3856.888 kb on - strandat 3856.888 kb on - strandat 3856.888 kb on - strandat 3856.922 kb on + strandat 3856.922 kb on + strandat 3856.922 kb on + strandat 3856.923 kb on - strandat 3856.923 kb on - strandat 3856.931 kb on + strandat 3857.016 kb on - strandat 3857.016 kb on - strandat 3857.098 kb on + strand, within Psest_3693at 3857.099 kb on - strand, within Psest_3693at 3857.922 kb on + strand, within Psest_3694at 3857.923 kb on - strand, within Psest_3694at 3857.937 kb on + strand, within Psest_3694at 3857.937 kb on + strand, within Psest_3694at 3857.938 kb on - strand, within Psest_3694at 3857.938 kb on - strand, within Psest_3694at 3857.943 kb on + strand, within Psest_3694at 3857.943 kb on + strand, within Psest_3694at 3857.983 kb on - strand, within Psest_3694at 3857.983 kb on - strand, within Psest_3694

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
3,854,531 + Psest_3690 0.37 +0.6
3,854,531 + Psest_3690 0.37 +0.2
3,854,532 - Psest_3690 0.38 -0.4
3,854,582 - Psest_3690 0.57 +0.8
3,854,649 + Psest_3690 0.83 +1.2
3,854,649 + Psest_3690 0.83 +1.8
3,854,649 + Psest_3690 0.83 -0.2
3,854,650 - Psest_3690 0.83 -0.3
3,854,650 - Psest_3690 0.83 +0.1
3,854,650 - Psest_3690 0.83 +0.0
3,854,650 - Psest_3690 0.83 +0.2
3,854,785 + +0.9
3,854,785 + -2.1
3,854,786 - -0.4
3,854,835 + Psest_3691 0.16 -1.5
3,854,836 - Psest_3691 0.16 +0.6
3,854,978 - Psest_3691 0.41 -0.8
3,855,130 - Psest_3691 0.67 +1.3
3,855,131 + Psest_3691 0.68 +2.0
3,855,131 + Psest_3691 0.68 +2.2
3,855,131 + Psest_3691 0.68 +1.2
3,855,231 + Psest_3691 0.85 -0.8
3,855,232 - Psest_3691 0.85 -0.3
3,855,232 - Psest_3691 0.85 +0.2
3,855,232 - Psest_3691 0.85 +1.3
3,855,232 - Psest_3691 0.85 -1.4
3,855,232 - Psest_3691 0.85 +0.4
3,855,232 - Psest_3691 0.85 +0.2
3,855,232 - Psest_3691 0.85 +0.3
3,855,339 + +1.4
3,855,339 + +1.2
3,855,339 + +0.0
3,855,340 - +0.8
3,855,531 + Psest_3692 0.13 +1.2
3,855,531 + Psest_3692 0.13 +1.2
3,855,833 + Psest_3692 0.31 +2.2
3,855,834 - Psest_3692 0.31 -0.1
3,856,106 + Psest_3692 0.47 +0.6
3,856,107 - Psest_3692 0.47 +0.4
3,856,107 - Psest_3692 0.47 +1.2
3,856,424 + Psest_3692 0.66 +0.3
3,856,887 + +1.4
3,856,888 - +0.4
3,856,888 - -1.1
3,856,888 - -0.9
3,856,888 - -0.1
3,856,922 + +0.5
3,856,922 + +1.2
3,856,922 + +0.9
3,856,923 - +1.5
3,856,923 - -0.4
3,856,931 + +0.7
3,857,016 - +2.2
3,857,016 - +1.2
3,857,098 + Psest_3693 0.14 -0.1
3,857,099 - Psest_3693 0.14 -0.6
3,857,922 + Psest_3694 0.13 +0.8
3,857,923 - Psest_3694 0.13 +2.2
3,857,937 + Psest_3694 0.15 +0.2
3,857,937 + Psest_3694 0.15 +1.2
3,857,938 - Psest_3694 0.15 +1.2
3,857,938 - Psest_3694 0.15 +0.0
3,857,943 + Psest_3694 0.15 +0.6
3,857,943 + Psest_3694 0.15 +2.6
3,857,983 - Psest_3694 0.19 +0.4
3,857,983 - Psest_3694 0.19 +0.2

Or see this region's nucleotide sequence