Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3662

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3661 and Psest_3662 are separated by 7 nucleotidesPsest_3662 and Psest_3663 are separated by 1 nucleotidesPsest_3663 and Psest_3664 overlap by 4 nucleotides Psest_3661: Psest_3661 - Protein of unknown function (DUF3530)., at 3,823,712 to 3,824,725 _3661 Psest_3662: Psest_3662 - DnaJ-domain-containing proteins 1, at 3,824,733 to 3,825,500 _3662 Psest_3663: Psest_3663 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 3,825,502 to 3,826,173 _3663 Psest_3664: Psest_3664 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 3,826,170 to 3,827,228 _3664 Position (kb) 3824 3825 3826Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3823.772 kb on + strandat 3823.772 kb on + strandat 3823.772 kb on + strandat 3823.773 kb on - strandat 3824.156 kb on - strand, within Psest_3661at 3824.220 kb on + strand, within Psest_3661at 3824.220 kb on + strand, within Psest_3661at 3824.289 kb on + strand, within Psest_3661at 3824.289 kb on + strand, within Psest_3661at 3824.289 kb on + strand, within Psest_3661at 3824.289 kb on + strand, within Psest_3661at 3824.290 kb on - strand, within Psest_3661at 3824.417 kb on + strand, within Psest_3661at 3824.473 kb on + strand, within Psest_3661at 3824.473 kb on + strand, within Psest_3661at 3824.474 kb on - strand, within Psest_3661at 3824.474 kb on - strand, within Psest_3661at 3824.507 kb on + strand, within Psest_3661at 3824.507 kb on + strand, within Psest_3661at 3824.508 kb on - strand, within Psest_3661at 3824.508 kb on - strand, within Psest_3661at 3824.508 kb on - strand, within Psest_3661at 3824.508 kb on - strand, within Psest_3661at 3824.532 kb on + strand, within Psest_3661at 3824.532 kb on + strand, within Psest_3661at 3824.533 kb on - strand, within Psest_3661at 3824.533 kb on - strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.543 kb on + strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.544 kb on - strand, within Psest_3661at 3824.545 kb on + strand, within Psest_3661at 3824.545 kb on + strand, within Psest_3661at 3824.546 kb on - strand, within Psest_3661at 3824.664 kb on - strandat 3824.711 kb on - strandat 3824.711 kb on - strandat 3824.723 kb on + strandat 3824.724 kb on - strandat 3824.858 kb on + strand, within Psest_3662at 3824.859 kb on - strand, within Psest_3662at 3824.859 kb on - strand, within Psest_3662at 3824.942 kb on - strand, within Psest_3662at 3825.267 kb on - strand, within Psest_3662at 3825.520 kb on + strandat 3825.520 kb on + strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3825.521 kb on - strandat 3826.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,823,772 + +0.4
3,823,772 + +0.3
3,823,772 + +0.1
3,823,773 - +1.1
3,824,156 - Psest_3661 0.44 +1.4
3,824,220 + Psest_3661 0.50 -0.9
3,824,220 + Psest_3661 0.50 +0.0
3,824,289 + Psest_3661 0.57 -0.7
3,824,289 + Psest_3661 0.57 -0.6
3,824,289 + Psest_3661 0.57 +0.6
3,824,289 + Psest_3661 0.57 -0.4
3,824,290 - Psest_3661 0.57 +0.8
3,824,417 + Psest_3661 0.70 +0.2
3,824,473 + Psest_3661 0.75 -0.5
3,824,473 + Psest_3661 0.75 +0.1
3,824,474 - Psest_3661 0.75 +0.2
3,824,474 - Psest_3661 0.75 +0.3
3,824,507 + Psest_3661 0.78 +0.6
3,824,507 + Psest_3661 0.78 -0.0
3,824,508 - Psest_3661 0.79 -0.8
3,824,508 - Psest_3661 0.79 +0.1
3,824,508 - Psest_3661 0.79 -0.0
3,824,508 - Psest_3661 0.79 +0.6
3,824,532 + Psest_3661 0.81 +0.4
3,824,532 + Psest_3661 0.81 +0.7
3,824,533 - Psest_3661 0.81 -1.2
3,824,533 - Psest_3661 0.81 +0.6
3,824,543 + Psest_3661 0.82 -0.4
3,824,543 + Psest_3661 0.82 -0.2
3,824,543 + Psest_3661 0.82 +0.4
3,824,543 + Psest_3661 0.82 -0.7
3,824,543 + Psest_3661 0.82 +0.0
3,824,543 + Psest_3661 0.82 +0.1
3,824,543 + Psest_3661 0.82 -0.9
3,824,543 + Psest_3661 0.82 +0.3
3,824,543 + Psest_3661 0.82 +1.2
3,824,543 + Psest_3661 0.82 +0.9
3,824,543 + Psest_3661 0.82 -0.1
3,824,543 + Psest_3661 0.82 -0.3
3,824,543 + Psest_3661 0.82 -1.2
3,824,543 + Psest_3661 0.82 -0.4
3,824,543 + Psest_3661 0.82 -0.3
3,824,543 + Psest_3661 0.82 -0.1
3,824,543 + Psest_3661 0.82 +1.2
3,824,543 + Psest_3661 0.82 -0.4
3,824,544 - Psest_3661 0.82 +0.2
3,824,544 - Psest_3661 0.82 +1.4
3,824,544 - Psest_3661 0.82 -1.2
3,824,544 - Psest_3661 0.82 +1.7
3,824,544 - Psest_3661 0.82 +0.2
3,824,544 - Psest_3661 0.82 +0.6
3,824,544 - Psest_3661 0.82 +1.5
3,824,544 - Psest_3661 0.82 -1.4
3,824,544 - Psest_3661 0.82 +0.9
3,824,544 - Psest_3661 0.82 +1.5
3,824,544 - Psest_3661 0.82 +1.2
3,824,545 + Psest_3661 0.82 +4.2
3,824,545 + Psest_3661 0.82 +1.1
3,824,546 - Psest_3661 0.82 +1.7
3,824,664 - +1.0
3,824,711 - -0.9
3,824,711 - +0.4
3,824,723 + -0.4
3,824,724 - +0.6
3,824,858 + Psest_3662 0.16 +0.9
3,824,859 - Psest_3662 0.16 +0.2
3,824,859 - Psest_3662 0.16 +1.6
3,824,942 - Psest_3662 0.27 +0.2
3,825,267 - Psest_3662 0.70 -1.6
3,825,520 + -1.3
3,825,520 + +1.0
3,825,521 - -0.1
3,825,521 - -2.2
3,825,521 - -0.5
3,825,521 - -0.8
3,825,521 - +0.1
3,826,256 - +0.5

Or see this region's nucleotide sequence