Strain Fitness in Marinobacter adhaerens HP15 around HP15_3495

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3493 and HP15_3494 are separated by 184 nucleotidesHP15_3494 and HP15_3495 are separated by 95 nucleotidesHP15_3495 and HP15_3496 are separated by 41 nucleotidesHP15_3496 and HP15_3497 are separated by 69 nucleotides HP15_3493: HP15_3493 - formamidopyrimidine-DNA glycosylase, at 3,678,473 to 3,679,210 _3493 HP15_3494: HP15_3494 - conserved hypothetical protein, membrane, at 3,679,395 to 3,679,724 _3494 HP15_3495: HP15_3495 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 3,679,820 to 3,680,509 _3495 HP15_3496: HP15_3496 - RNA-binding S4 domain protein, at 3,680,551 to 3,680,958 _3496 HP15_3497: HP15_3497 - Hsp33-like chaperonin, at 3,681,028 to 3,681,882 _3497 Position (kb) 3679 3680 3681Strain fitness (log2 ratio) -2 -1 0 1 2at 3678.907 kb on + strand, within HP15_3493at 3678.915 kb on - strand, within HP15_3493at 3678.952 kb on + strand, within HP15_3493at 3678.980 kb on + strand, within HP15_3493at 3678.992 kb on - strand, within HP15_3493at 3678.994 kb on + strand, within HP15_3493at 3679.002 kb on - strand, within HP15_3493at 3679.047 kb on + strand, within HP15_3493at 3679.055 kb on - strand, within HP15_3493at 3679.096 kb on + strand, within HP15_3493at 3679.104 kb on - strand, within HP15_3493at 3679.106 kb on + strand, within HP15_3493at 3679.361 kb on - strandat 3679.368 kb on - strandat 3679.469 kb on + strand, within HP15_3494at 3679.491 kb on - strand, within HP15_3494at 3679.510 kb on - strand, within HP15_3494at 3679.544 kb on + strand, within HP15_3494at 3679.677 kb on - strand, within HP15_3494at 3679.707 kb on + strandat 3679.715 kb on - strandat 3679.715 kb on - strandat 3679.752 kb on - strandat 3679.828 kb on - strandat 3679.905 kb on - strand, within HP15_3495at 3679.905 kb on - strand, within HP15_3495at 3679.935 kb on + strand, within HP15_3495at 3679.950 kb on - strand, within HP15_3495at 3680.000 kb on + strand, within HP15_3495at 3680.050 kb on - strand, within HP15_3495at 3680.059 kb on + strand, within HP15_3495at 3680.059 kb on + strand, within HP15_3495at 3680.108 kb on + strand, within HP15_3495at 3680.161 kb on + strand, within HP15_3495at 3680.228 kb on + strand, within HP15_3495at 3680.240 kb on + strand, within HP15_3495at 3680.251 kb on + strand, within HP15_3495at 3680.259 kb on - strand, within HP15_3495at 3680.259 kb on - strand, within HP15_3495at 3680.303 kb on - strand, within HP15_3495at 3680.367 kb on + strand, within HP15_3495at 3680.380 kb on - strand, within HP15_3495at 3680.548 kb on - strandat 3680.548 kb on - strandat 3680.548 kb on - strandat 3680.606 kb on - strand, within HP15_3496at 3680.634 kb on + strand, within HP15_3496at 3680.859 kb on + strand, within HP15_3496at 3680.859 kb on + strand, within HP15_3496at 3680.867 kb on - strand, within HP15_3496at 3680.887 kb on + strand, within HP15_3496at 3681.024 kb on + strandat 3681.035 kb on + strandat 3681.083 kb on - strandat 3681.107 kb on + strandat 3681.145 kb on - strand, within HP15_3497at 3681.305 kb on + strand, within HP15_3497at 3681.313 kb on - strand, within HP15_3497at 3681.407 kb on + strand, within HP15_3497at 3681.415 kb on - strand, within HP15_3497

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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3,678,907 + HP15_3493 0.59 +0.8
3,678,915 - HP15_3493 0.60 +2.2
3,678,952 + HP15_3493 0.65 -0.0
3,678,980 + HP15_3493 0.69 -1.1
3,678,992 - HP15_3493 0.70 +1.6
3,678,994 + HP15_3493 0.71 -0.8
3,679,002 - HP15_3493 0.72 -1.1
3,679,047 + HP15_3493 0.78 +0.0
3,679,055 - HP15_3493 0.79 -0.1
3,679,096 + HP15_3493 0.84 -0.8
3,679,104 - HP15_3493 0.86 -1.1
3,679,106 + HP15_3493 0.86 -0.5
3,679,361 - -0.4
3,679,368 - -1.3
3,679,469 + HP15_3494 0.22 -1.0
3,679,491 - HP15_3494 0.29 -1.1
3,679,510 - HP15_3494 0.35 -0.6
3,679,544 + HP15_3494 0.45 -0.2
3,679,677 - HP15_3494 0.85 +0.4
3,679,707 + -0.0
3,679,715 - +0.6
3,679,715 - +0.5
3,679,752 - -1.3
3,679,828 - +0.6
3,679,905 - HP15_3495 0.12 -0.8
3,679,905 - HP15_3495 0.12 -0.6
3,679,935 + HP15_3495 0.17 -0.8
3,679,950 - HP15_3495 0.19 -0.5
3,680,000 + HP15_3495 0.26 -0.5
3,680,050 - HP15_3495 0.33 -0.7
3,680,059 + HP15_3495 0.35 +0.4
3,680,059 + HP15_3495 0.35 -0.3
3,680,108 + HP15_3495 0.42 -2.1
3,680,161 + HP15_3495 0.49 +0.5
3,680,228 + HP15_3495 0.59 +0.8
3,680,240 + HP15_3495 0.61 -0.5
3,680,251 + HP15_3495 0.62 +1.5
3,680,259 - HP15_3495 0.64 -0.3
3,680,259 - HP15_3495 0.64 -0.2
3,680,303 - HP15_3495 0.70 -0.4
3,680,367 + HP15_3495 0.79 +0.5
3,680,380 - HP15_3495 0.81 -0.4
3,680,548 - -0.5
3,680,548 - -0.7
3,680,548 - +0.4
3,680,606 - HP15_3496 0.13 +0.2
3,680,634 + HP15_3496 0.20 +0.9
3,680,859 + HP15_3496 0.75 -0.0
3,680,859 + HP15_3496 0.75 -1.2
3,680,867 - HP15_3496 0.77 -0.0
3,680,887 + HP15_3496 0.82 +0.0
3,681,024 + +0.6
3,681,035 + +0.4
3,681,083 - -1.5
3,681,107 + -0.1
3,681,145 - HP15_3497 0.14 -1.5
3,681,305 + HP15_3497 0.32 -0.5
3,681,313 - HP15_3497 0.33 -0.9
3,681,407 + HP15_3497 0.44 -0.4
3,681,415 - HP15_3497 0.45 +1.7

Or see this region's nucleotide sequence