Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3555

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3553 and Psest_3554 are separated by 112 nucleotidesPsest_3554 and Psest_3555 overlap by 4 nucleotidesPsest_3555 and Psest_3556 are separated by 16 nucleotidesPsest_3556 and Psest_3557 are separated by 29 nucleotidesPsest_3557 and Psest_3558 overlap by 32 nucleotides Psest_3552: Psest_3552 - riboflavin biosynthesis protein RibD, at 3,730,904 to 3,732,004 _3552 Psest_3553: Psest_3553 - transcriptional regulator NrdR, at 3,732,001 to 3,732,468 _3553 Psest_3554: Psest_3554 - Uncharacterized protein conserved in bacteria, at 3,732,581 to 3,733,006 _3554 Psest_3555: Psest_3555 - Predicted methyltransferase, at 3,733,003 to 3,733,656 _3555 Psest_3556: Psest_3556 - 2'-5' RNA ligase, at 3,733,673 to 3,734,194 _3556 Psest_3557: Psest_3557 - Predicted redox protein, regulator of disulfide bond formation, at 3,734,224 to 3,734,463 _3557 Psest_3558: Psest_3558 - Predicted transporter component, at 3,734,432 to 3,735,658 _3558 Position (kb) 3733 3734Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3732.546 kb on + strandat 3732.546 kb on + strandat 3732.546 kb on + strandat 3732.546 kb on + strandat 3732.546 kb on + strandat 3732.546 kb on + strandat 3732.547 kb on - strandat 3732.547 kb on - strandat 3732.547 kb on - strandat 3732.547 kb on - strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.548 kb on + strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.549 kb on - strandat 3732.603 kb on + strandat 3732.603 kb on + strandat 3732.603 kb on + strandat 3732.604 kb on - strandat 3732.604 kb on - strandat 3732.949 kb on + strand, within Psest_3554at 3732.949 kb on + strand, within Psest_3554at 3732.949 kb on + strand, within Psest_3554at 3732.950 kb on - strand, within Psest_3554at 3732.950 kb on - strand, within Psest_3554at 3732.950 kb on - strand, within Psest_3554at 3733.067 kb on + strandat 3733.068 kb on - strandat 3733.119 kb on + strand, within Psest_3555at 3733.394 kb on + strand, within Psest_3555at 3733.394 kb on + strand, within Psest_3555at 3733.395 kb on - strand, within Psest_3555at 3733.395 kb on - strand, within Psest_3555at 3733.433 kb on - strand, within Psest_3555at 3733.462 kb on + strand, within Psest_3555at 3733.463 kb on - strand, within Psest_3555at 3733.561 kb on + strand, within Psest_3555at 3733.654 kb on + strandat 3733.655 kb on - strandat 3733.948 kb on + strand, within Psest_3556at 3733.948 kb on + strand, within Psest_3556at 3733.948 kb on + strand, within Psest_3556at 3733.948 kb on + strand, within Psest_3556at 3733.948 kb on + strand, within Psest_3556at 3733.949 kb on - strand, within Psest_3556at 3733.949 kb on - strand, within Psest_3556at 3733.962 kb on + strand, within Psest_3556at 3733.962 kb on + strand, within Psest_3556at 3733.963 kb on - strand, within Psest_3556at 3734.011 kb on - strand, within Psest_3556at 3734.137 kb on + strand, within Psest_3556at 3734.156 kb on + strandat 3734.156 kb on + strandat 3734.157 kb on - strandat 3734.234 kb on - strandat 3734.288 kb on + strand, within Psest_3557at 3734.289 kb on - strand, within Psest_3557at 3734.395 kb on - strand, within Psest_3557at 3734.407 kb on - strand, within Psest_3557at 3734.407 kb on - strand, within Psest_3557at 3734.408 kb on + strand, within Psest_3557at 3734.408 kb on + strand, within Psest_3557at 3734.409 kb on - strand, within Psest_3557at 3734.409 kb on - strand, within Psest_3557at 3734.428 kb on + strand, within Psest_3557at 3734.428 kb on + strand, within Psest_3557at 3734.428 kb on + strand, within Psest_3557at 3734.428 kb on + strand, within Psest_3557at 3734.428 kb on + strand, within Psest_3557at 3734.428 kb on + strand, within Psest_3557at 3734.429 kb on - strand, within Psest_3557at 3734.429 kb on - strand, within Psest_3557at 3734.429 kb on - strand, within Psest_3557at 3734.632 kb on - strand, within Psest_3558

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,732,546 + +1.2
3,732,546 + +0.5
3,732,546 + +0.6
3,732,546 + +1.5
3,732,546 + +1.6
3,732,546 + +2.2
3,732,547 - +0.6
3,732,547 - +0.1
3,732,547 - -0.4
3,732,547 - -0.5
3,732,548 + +0.4
3,732,548 + +0.6
3,732,548 + +2.2
3,732,548 + -0.1
3,732,548 + +1.4
3,732,548 + +0.4
3,732,548 + -1.1
3,732,548 + -1.7
3,732,548 + +0.2
3,732,548 + +0.9
3,732,548 + +0.2
3,732,548 + -0.1
3,732,548 + -0.8
3,732,548 + +1.2
3,732,549 - -0.4
3,732,549 - +0.7
3,732,549 - -0.2
3,732,549 - +0.6
3,732,549 - -0.1
3,732,549 - -0.4
3,732,549 - +0.2
3,732,549 - +0.2
3,732,549 - -0.8
3,732,549 - +0.9
3,732,549 - +0.0
3,732,549 - +0.2
3,732,549 - +0.6
3,732,549 - +0.8
3,732,549 - +1.2
3,732,549 - +0.6
3,732,603 + -0.1
3,732,603 + -0.4
3,732,603 + -0.2
3,732,604 - -0.1
3,732,604 - +2.0
3,732,949 + Psest_3554 0.86 +3.2
3,732,949 + Psest_3554 0.86 +2.2
3,732,949 + Psest_3554 0.86 +0.4
3,732,950 - Psest_3554 0.87 -0.8
3,732,950 - Psest_3554 0.87 +0.5
3,732,950 - Psest_3554 0.87 +1.2
3,733,067 + +1.2
3,733,068 - +0.2
3,733,119 + Psest_3555 0.18 +2.5
3,733,394 + Psest_3555 0.60 +0.3
3,733,394 + Psest_3555 0.60 +0.1
3,733,395 - Psest_3555 0.60 +0.5
3,733,395 - Psest_3555 0.60 +1.2
3,733,433 - Psest_3555 0.66 +1.8
3,733,462 + Psest_3555 0.70 +1.2
3,733,463 - Psest_3555 0.70 +0.2
3,733,561 + Psest_3555 0.85 -0.8
3,733,654 + +0.2
3,733,655 - +1.2
3,733,948 + Psest_3556 0.53 +0.1
3,733,948 + Psest_3556 0.53 -0.6
3,733,948 + Psest_3556 0.53 +1.1
3,733,948 + Psest_3556 0.53 +1.5
3,733,948 + Psest_3556 0.53 +1.0
3,733,949 - Psest_3556 0.53 +0.6
3,733,949 - Psest_3556 0.53 -2.0
3,733,962 + Psest_3556 0.55 -0.8
3,733,962 + Psest_3556 0.55 +0.3
3,733,963 - Psest_3556 0.56 +0.4
3,734,011 - Psest_3556 0.65 +2.2
3,734,137 + Psest_3556 0.89 -0.4
3,734,156 + +0.2
3,734,156 + -1.1
3,734,157 - -0.4
3,734,234 - -0.8
3,734,288 + Psest_3557 0.27 +0.7
3,734,289 - Psest_3557 0.27 +0.1
3,734,395 - Psest_3557 0.71 +0.2
3,734,407 - Psest_3557 0.76 +0.6
3,734,407 - Psest_3557 0.76 +0.5
3,734,408 + Psest_3557 0.77 +0.6
3,734,408 + Psest_3557 0.77 +0.6
3,734,409 - Psest_3557 0.77 +0.3
3,734,409 - Psest_3557 0.77 -1.4
3,734,428 + Psest_3557 0.85 +0.8
3,734,428 + Psest_3557 0.85 -1.8
3,734,428 + Psest_3557 0.85 +0.8
3,734,428 + Psest_3557 0.85 +1.8
3,734,428 + Psest_3557 0.85 +0.7
3,734,428 + Psest_3557 0.85 +1.0
3,734,429 - Psest_3557 0.85 +0.1
3,734,429 - Psest_3557 0.85 +0.4
3,734,429 - Psest_3557 0.85 +2.4
3,734,632 - Psest_3558 0.16 +0.9

Or see this region's nucleotide sequence