Strain Fitness in Marinobacter adhaerens HP15 around HP15_3400

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3399 and HP15_3400 are separated by 46 nucleotidesHP15_3400 and HP15_3401 are separated by 91 nucleotides HP15_3399: HP15_3399 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 3,569,831 to 3,570,835 _3399 HP15_3400: HP15_3400 - transcriptional regulator, ArsR family protein, at 3,570,882 to 3,571,646 _3400 HP15_3401: HP15_3401 - sodium bile acid symporter family protein, at 3,571,738 to 3,572,808 _3401 Position (kb) 3570 3571 3572Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3569.915 kb on - strandat 3570.139 kb on + strand, within HP15_3399at 3570.502 kb on + strand, within HP15_3399at 3570.522 kb on + strand, within HP15_3399at 3570.522 kb on + strand, within HP15_3399at 3570.607 kb on - strand, within HP15_3399at 3570.754 kb on + strandat 3570.764 kb on + strandat 3570.851 kb on + strandat 3570.918 kb on - strandat 3571.063 kb on - strand, within HP15_3400at 3571.084 kb on + strand, within HP15_3400at 3571.091 kb on + strand, within HP15_3400at 3571.106 kb on + strand, within HP15_3400at 3571.174 kb on - strand, within HP15_3400at 3571.183 kb on - strand, within HP15_3400at 3571.190 kb on - strand, within HP15_3400at 3571.203 kb on - strand, within HP15_3400at 3571.266 kb on - strand, within HP15_3400at 3571.352 kb on - strand, within HP15_3400at 3571.396 kb on - strand, within HP15_3400at 3571.417 kb on - strand, within HP15_3400at 3571.459 kb on - strand, within HP15_3400at 3571.475 kb on - strand, within HP15_3400at 3571.507 kb on + strand, within HP15_3400at 3571.515 kb on - strand, within HP15_3400at 3571.524 kb on + strand, within HP15_3400at 3571.609 kb on + strandat 3571.865 kb on - strand, within HP15_3401at 3571.932 kb on - strand, within HP15_3401at 3571.991 kb on + strand, within HP15_3401at 3572.044 kb on + strand, within HP15_3401at 3572.113 kb on - strand, within HP15_3401at 3572.113 kb on - strand, within HP15_3401at 3572.113 kb on - strand, within HP15_3401at 3572.113 kb on - strand, within HP15_3401at 3572.165 kb on - strand, within HP15_3401at 3572.220 kb on + strand, within HP15_3401at 3572.250 kb on + strand, within HP15_3401at 3572.251 kb on + strand, within HP15_3401at 3572.251 kb on - strand, within HP15_3401at 3572.307 kb on + strand, within HP15_3401at 3572.308 kb on + strand, within HP15_3401at 3572.325 kb on + strand, within HP15_3401at 3572.335 kb on + strand, within HP15_3401at 3572.343 kb on - strand, within HP15_3401at 3572.343 kb on - strand, within HP15_3401at 3572.368 kb on + strand, within HP15_3401at 3572.414 kb on - strand, within HP15_3401at 3572.518 kb on + strand, within HP15_3401at 3572.591 kb on + strand, within HP15_3401at 3572.606 kb on - strand, within HP15_3401

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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3,569,915 - -1.0
3,570,139 + HP15_3399 0.31 +0.3
3,570,502 + HP15_3399 0.67 +0.8
3,570,522 + HP15_3399 0.69 -0.2
3,570,522 + HP15_3399 0.69 +0.6
3,570,607 - HP15_3399 0.77 -1.1
3,570,754 + -0.9
3,570,764 + -0.0
3,570,851 + +1.5
3,570,918 - +2.8
3,571,063 - HP15_3400 0.24 +3.8
3,571,084 + HP15_3400 0.26 +4.0
3,571,091 + HP15_3400 0.27 +3.4
3,571,106 + HP15_3400 0.29 +3.6
3,571,174 - HP15_3400 0.38 +3.8
3,571,183 - HP15_3400 0.39 +4.1
3,571,190 - HP15_3400 0.40 +3.8
3,571,203 - HP15_3400 0.42 +4.3
3,571,266 - HP15_3400 0.50 +0.4
3,571,352 - HP15_3400 0.61 +4.0
3,571,396 - HP15_3400 0.67 +4.3
3,571,417 - HP15_3400 0.70 +4.4
3,571,459 - HP15_3400 0.75 +2.9
3,571,475 - HP15_3400 0.78 +2.9
3,571,507 + HP15_3400 0.82 +3.8
3,571,515 - HP15_3400 0.83 +4.5
3,571,524 + HP15_3400 0.84 +2.5
3,571,609 + +3.2
3,571,865 - HP15_3401 0.12 +0.4
3,571,932 - HP15_3401 0.18 +0.5
3,571,991 + HP15_3401 0.24 -0.6
3,572,044 + HP15_3401 0.29 +0.0
3,572,113 - HP15_3401 0.35 -2.4
3,572,113 - HP15_3401 0.35 -0.8
3,572,113 - HP15_3401 0.35 -1.2
3,572,113 - HP15_3401 0.35 -0.3
3,572,165 - HP15_3401 0.40 +0.8
3,572,220 + HP15_3401 0.45 -1.5
3,572,250 + HP15_3401 0.48 -0.9
3,572,251 + HP15_3401 0.48 +0.1
3,572,251 - HP15_3401 0.48 -1.0
3,572,307 + HP15_3401 0.53 -0.3
3,572,308 + HP15_3401 0.53 +0.1
3,572,325 + HP15_3401 0.55 +0.6
3,572,335 + HP15_3401 0.56 -1.2
3,572,343 - HP15_3401 0.56 -0.2
3,572,343 - HP15_3401 0.56 +0.3
3,572,368 + HP15_3401 0.59 +1.5
3,572,414 - HP15_3401 0.63 -0.3
3,572,518 + HP15_3401 0.73 +0.4
3,572,591 + HP15_3401 0.80 -0.1
3,572,606 - HP15_3401 0.81 -0.1

Or see this region's nucleotide sequence