Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3473

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3472 and Psest_3473 are separated by 15 nucleotidesPsest_3473 and Psest_3474 overlap by 14 nucleotidesPsest_3474 and Psest_3475 overlap by 4 nucleotides Psest_3472: Psest_3472 - Long-chain acyl-CoA synthetases (AMP-forming), at 3,641,767 to 3,643,212 _3472 Psest_3473: Psest_3473 - hypothetical protein, at 3,643,228 to 3,643,899 _3473 Psest_3474: Psest_3474 - Short-chain dehydrogenases of various substrate specificities, at 3,643,886 to 3,644,719 _3474 Psest_3475: Psest_3475 - hypothetical protein, at 3,644,716 to 3,645,366 _3475 Position (kb) 3643 3644Strain fitness (log2 ratio) -1 0 1 2at 3642.628 kb on + strand, within Psest_3472at 3643.276 kb on + strandat 3643.276 kb on + strandat 3643.277 kb on - strandat 3643.336 kb on + strand, within Psest_3473at 3643.336 kb on + strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.360 kb on + strand, within Psest_3473at 3643.361 kb on - strand, within Psest_3473at 3643.453 kb on + strand, within Psest_3473at 3643.454 kb on - strand, within Psest_3473at 3643.574 kb on - strand, within Psest_3473at 3643.574 kb on - strand, within Psest_3473at 3643.574 kb on - strand, within Psest_3473at 3643.579 kb on + strand, within Psest_3473at 3643.579 kb on + strand, within Psest_3473at 3643.835 kb on - strandat 3644.414 kb on + strand, within Psest_3474at 3644.414 kb on + strand, within Psest_3474at 3644.414 kb on + strand, within Psest_3474at 3644.414 kb on + strand, within Psest_3474at 3644.415 kb on - strand, within Psest_3474at 3644.586 kb on + strand, within Psest_3474at 3644.839 kb on + strand, within Psest_3475at 3644.840 kb on - strand, within Psest_3475at 3644.840 kb on - strand, within Psest_3475at 3644.840 kb on - strand, within Psest_3475at 3644.840 kb on - strand, within Psest_3475

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,642,628 + Psest_3472 0.60 +0.1
3,643,276 + -0.1
3,643,276 + +0.7
3,643,277 - +0.9
3,643,336 + Psest_3473 0.16 +0.7
3,643,336 + Psest_3473 0.16 -0.4
3,643,337 - Psest_3473 0.16 +0.8
3,643,337 - Psest_3473 0.16 +1.2
3,643,337 - Psest_3473 0.16 +1.8
3,643,337 - Psest_3473 0.16 +1.0
3,643,337 - Psest_3473 0.16 +0.2
3,643,337 - Psest_3473 0.16 -1.4
3,643,337 - Psest_3473 0.16 +0.4
3,643,360 + Psest_3473 0.20 -0.7
3,643,361 - Psest_3473 0.20 +2.3
3,643,453 + Psest_3473 0.33 -0.0
3,643,454 - Psest_3473 0.34 +0.7
3,643,574 - Psest_3473 0.51 +1.8
3,643,574 - Psest_3473 0.51 +0.1
3,643,574 - Psest_3473 0.51 +1.6
3,643,579 + Psest_3473 0.52 +0.2
3,643,579 + Psest_3473 0.52 +0.2
3,643,835 - -0.5
3,644,414 + Psest_3474 0.63 -1.1
3,644,414 + Psest_3474 0.63 -0.6
3,644,414 + Psest_3474 0.63 +0.4
3,644,414 + Psest_3474 0.63 -0.7
3,644,415 - Psest_3474 0.63 +0.2
3,644,586 + Psest_3474 0.84 +0.6
3,644,839 + Psest_3475 0.19 +1.6
3,644,840 - Psest_3475 0.19 +2.2
3,644,840 - Psest_3475 0.19 +0.6
3,644,840 - Psest_3475 0.19 +0.1
3,644,840 - Psest_3475 0.19 +0.2

Or see this region's nucleotide sequence