Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3372

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3370 and Psest_3371 overlap by 4 nucleotidesPsest_3371 and Psest_3372 overlap by 4 nucleotidesPsest_3372 and Psest_3373 overlap by 4 nucleotidesPsest_3373 and Psest_3374 are separated by 4 nucleotides Psest_3370: Psest_3370 - prepilin-type N-terminal cleavage/methylation domain, at 3,539,223 to 3,539,714 _3370 Psest_3371: Psest_3371 - type IV pilus modification protein PilV, at 3,539,711 to 3,540,181 _3371 Psest_3372: Psest_3372 - Tfp pilus assembly protein PilW, at 3,540,178 to 3,541,251 _3372 Psest_3373: Psest_3373 - Tfp pilus assembly protein PilX, at 3,541,248 to 3,541,781 _3373 Psest_3374: Psest_3374 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 3,541,786 to 3,545,556 _3374 Position (kb) 3540 3541 3542Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3539.278 kb on + strand, within Psest_3370at 3539.278 kb on + strand, within Psest_3370at 3539.279 kb on - strand, within Psest_3370at 3539.324 kb on - strand, within Psest_3370at 3539.361 kb on - strand, within Psest_3370at 3539.361 kb on - strand, within Psest_3370at 3539.361 kb on - strand, within Psest_3370at 3539.377 kb on + strand, within Psest_3370at 3539.378 kb on - strand, within Psest_3370at 3539.378 kb on - strand, within Psest_3370at 3539.378 kb on - strand, within Psest_3370at 3539.378 kb on - strand, within Psest_3370at 3539.485 kb on + strand, within Psest_3370at 3539.486 kb on - strand, within Psest_3370at 3539.561 kb on + strand, within Psest_3370at 3539.561 kb on + strand, within Psest_3370at 3539.561 kb on + strand, within Psest_3370at 3539.561 kb on + strand, within Psest_3370at 3539.561 kb on + strand, within Psest_3370at 3539.561 kb on + strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.562 kb on - strand, within Psest_3370at 3539.724 kb on + strandat 3539.724 kb on + strandat 3539.725 kb on - strandat 3539.766 kb on + strand, within Psest_3371at 3539.766 kb on + strand, within Psest_3371at 3539.766 kb on + strand, within Psest_3371at 3539.766 kb on + strand, within Psest_3371at 3539.767 kb on - strand, within Psest_3371at 3539.852 kb on + strand, within Psest_3371at 3539.852 kb on + strand, within Psest_3371at 3539.853 kb on - strand, within Psest_3371at 3539.853 kb on - strand, within Psest_3371at 3539.853 kb on - strand, within Psest_3371at 3539.855 kb on + strand, within Psest_3371at 3539.855 kb on + strand, within Psest_3371at 3539.869 kb on + strand, within Psest_3371at 3539.874 kb on + strand, within Psest_3371at 3539.883 kb on - strand, within Psest_3371at 3539.883 kb on - strand, within Psest_3371at 3539.936 kb on + strand, within Psest_3371at 3539.936 kb on + strand, within Psest_3371at 3539.937 kb on - strand, within Psest_3371at 3539.937 kb on - strand, within Psest_3371at 3540.177 kb on + strandat 3540.178 kb on - strandat 3540.227 kb on + strandat 3540.228 kb on - strandat 3540.228 kb on - strandat 3540.270 kb on - strandat 3540.270 kb on - strandat 3540.301 kb on + strand, within Psest_3372at 3540.301 kb on + strand, within Psest_3372at 3540.301 kb on + strand, within Psest_3372at 3540.301 kb on + strand, within Psest_3372at 3540.301 kb on + strand, within Psest_3372at 3540.302 kb on - strand, within Psest_3372at 3540.302 kb on - strand, within Psest_3372at 3540.312 kb on + strand, within Psest_3372at 3540.313 kb on - strand, within Psest_3372at 3540.463 kb on + strand, within Psest_3372at 3540.464 kb on - strand, within Psest_3372at 3540.566 kb on - strand, within Psest_3372at 3540.566 kb on - strand, within Psest_3372at 3540.566 kb on - strand, within Psest_3372at 3540.645 kb on + strand, within Psest_3372at 3540.653 kb on - strand, within Psest_3372at 3540.794 kb on - strand, within Psest_3372at 3540.804 kb on + strand, within Psest_3372at 3540.836 kb on - strand, within Psest_3372at 3540.836 kb on - strand, within Psest_3372at 3540.836 kb on - strand, within Psest_3372at 3540.836 kb on - strand, within Psest_3372at 3540.836 kb on - strand, within Psest_3372at 3540.985 kb on + strand, within Psest_3372at 3540.986 kb on - strand, within Psest_3372at 3540.989 kb on + strand, within Psest_3372at 3540.990 kb on - strand, within Psest_3372at 3540.990 kb on - strand, within Psest_3372at 3541.011 kb on - strand, within Psest_3372at 3541.038 kb on + strand, within Psest_3372at 3541.162 kb on + strandat 3541.310 kb on + strand, within Psest_3373at 3541.311 kb on - strand, within Psest_3373at 3541.581 kb on + strand, within Psest_3373at 3541.581 kb on + strand, within Psest_3373at 3541.581 kb on + strand, within Psest_3373at 3541.581 kb on + strand, within Psest_3373at 3541.582 kb on - strand, within Psest_3373at 3541.699 kb on + strand, within Psest_3373at 3541.700 kb on - strand, within Psest_3373at 3541.700 kb on - strand, within Psest_3373at 3541.731 kb on - strandat 3541.764 kb on + strandat 3541.765 kb on - strandat 3541.847 kb on + strandat 3541.920 kb on - strandat 3541.940 kb on + strandat 3542.011 kb on + strandat 3542.030 kb on - strandat 3542.128 kb on + strandat 3542.129 kb on - strandat 3542.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,539,278 + Psest_3370 0.11 +0.1
3,539,278 + Psest_3370 0.11 -0.4
3,539,279 - Psest_3370 0.11 +1.6
3,539,324 - Psest_3370 0.21 +2.3
3,539,361 - Psest_3370 0.28 +1.1
3,539,361 - Psest_3370 0.28 +2.3
3,539,361 - Psest_3370 0.28 +1.3
3,539,377 + Psest_3370 0.31 -0.6
3,539,378 - Psest_3370 0.32 +1.8
3,539,378 - Psest_3370 0.32 +0.8
3,539,378 - Psest_3370 0.32 -0.2
3,539,378 - Psest_3370 0.32 +0.9
3,539,485 + Psest_3370 0.53 +2.5
3,539,486 - Psest_3370 0.53 +1.4
3,539,561 + Psest_3370 0.69 +0.3
3,539,561 + Psest_3370 0.69 -0.0
3,539,561 + Psest_3370 0.69 -0.2
3,539,561 + Psest_3370 0.69 +2.2
3,539,561 + Psest_3370 0.69 -0.8
3,539,561 + Psest_3370 0.69 -2.0
3,539,562 - Psest_3370 0.69 +1.6
3,539,562 - Psest_3370 0.69 +0.5
3,539,562 - Psest_3370 0.69 +1.0
3,539,562 - Psest_3370 0.69 +0.1
3,539,562 - Psest_3370 0.69 +0.5
3,539,562 - Psest_3370 0.69 +1.4
3,539,562 - Psest_3370 0.69 +1.5
3,539,562 - Psest_3370 0.69 +1.1
3,539,562 - Psest_3370 0.69 +1.0
3,539,562 - Psest_3370 0.69 +1.1
3,539,562 - Psest_3370 0.69 +0.8
3,539,562 - Psest_3370 0.69 +1.4
3,539,562 - Psest_3370 0.69 +0.8
3,539,562 - Psest_3370 0.69 +1.5
3,539,724 + +1.1
3,539,724 + +0.5
3,539,725 - +1.3
3,539,766 + Psest_3371 0.12 +0.3
3,539,766 + Psest_3371 0.12 +0.4
3,539,766 + Psest_3371 0.12 +1.3
3,539,766 + Psest_3371 0.12 +1.3
3,539,767 - Psest_3371 0.12 +1.2
3,539,852 + Psest_3371 0.30 +1.5
3,539,852 + Psest_3371 0.30 +0.4
3,539,853 - Psest_3371 0.30 +1.3
3,539,853 - Psest_3371 0.30 +1.6
3,539,853 - Psest_3371 0.30 +0.2
3,539,855 + Psest_3371 0.31 +1.4
3,539,855 + Psest_3371 0.31 +0.4
3,539,869 + Psest_3371 0.34 +0.8
3,539,874 + Psest_3371 0.35 +1.1
3,539,883 - Psest_3371 0.37 +1.5
3,539,883 - Psest_3371 0.37 -0.6
3,539,936 + Psest_3371 0.48 +1.0
3,539,936 + Psest_3371 0.48 +0.1
3,539,937 - Psest_3371 0.48 +1.1
3,539,937 - Psest_3371 0.48 +0.9
3,540,177 + +0.6
3,540,178 - +1.0
3,540,227 + +0.3
3,540,228 - +0.9
3,540,228 - +0.9
3,540,270 - +0.5
3,540,270 - +1.4
3,540,301 + Psest_3372 0.11 +1.3
3,540,301 + Psest_3372 0.11 +1.7
3,540,301 + Psest_3372 0.11 +1.0
3,540,301 + Psest_3372 0.11 +1.0
3,540,301 + Psest_3372 0.11 +1.2
3,540,302 - Psest_3372 0.12 +1.4
3,540,302 - Psest_3372 0.12 +0.8
3,540,312 + Psest_3372 0.12 +1.1
3,540,313 - Psest_3372 0.13 +0.4
3,540,463 + Psest_3372 0.27 +1.1
3,540,464 - Psest_3372 0.27 +0.1
3,540,566 - Psest_3372 0.36 +0.9
3,540,566 - Psest_3372 0.36 +2.8
3,540,566 - Psest_3372 0.36 +0.9
3,540,645 + Psest_3372 0.43 +1.0
3,540,653 - Psest_3372 0.44 +0.7
3,540,794 - Psest_3372 0.57 +1.7
3,540,804 + Psest_3372 0.58 +1.2
3,540,836 - Psest_3372 0.61 +0.4
3,540,836 - Psest_3372 0.61 +1.1
3,540,836 - Psest_3372 0.61 +1.8
3,540,836 - Psest_3372 0.61 +0.4
3,540,836 - Psest_3372 0.61 +0.5
3,540,985 + Psest_3372 0.75 +0.8
3,540,986 - Psest_3372 0.75 +3.2
3,540,989 + Psest_3372 0.76 +1.0
3,540,990 - Psest_3372 0.76 +0.3
3,540,990 - Psest_3372 0.76 +1.4
3,541,011 - Psest_3372 0.78 +0.2
3,541,038 + Psest_3372 0.80 +0.8
3,541,162 + +0.8
3,541,310 + Psest_3373 0.12 +1.8
3,541,311 - Psest_3373 0.12 +0.8
3,541,581 + Psest_3373 0.62 +0.7
3,541,581 + Psest_3373 0.62 +1.0
3,541,581 + Psest_3373 0.62 +0.8
3,541,581 + Psest_3373 0.62 +0.8
3,541,582 - Psest_3373 0.63 +1.2
3,541,699 + Psest_3373 0.84 +1.0
3,541,700 - Psest_3373 0.85 +0.0
3,541,700 - Psest_3373 0.85 +1.3
3,541,731 - +0.5
3,541,764 + +1.1
3,541,765 - +1.0
3,541,847 + +0.4
3,541,920 - -1.3
3,541,940 + +0.7
3,542,011 + +1.1
3,542,030 - +0.3
3,542,128 + -0.4
3,542,129 - +1.5
3,542,134 - -0.3

Or see this region's nucleotide sequence