Strain Fitness in Marinobacter adhaerens HP15 around HP15_3056

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3055 and HP15_3056 are separated by 161 nucleotidesHP15_3056 and HP15_3057 overlap by 1 nucleotides HP15_3055: HP15_3055 - high-affinity leucine-specific leucine-specific-binding periplasmic protein of high-affinity branched-chain amino acid ABC transporter transport system periplasmic binding protein, at 3,205,768 to 3,206,880 _3055 HP15_3056: HP15_3056 - high-affinity branched-chain amino acid ABC transporter, permease protein, at 3,207,042 to 3,207,965 _3056 HP15_3057: HP15_3057 - leucine/isoleucine/valine transporter permease subunit, at 3,207,965 to 3,209,236 _3057 Position (kb) 3207 3208Strain fitness (log2 ratio) -1 0 1 2 3 4at 3206.081 kb on + strand, within HP15_3055at 3206.081 kb on + strand, within HP15_3055at 3206.081 kb on + strand, within HP15_3055at 3206.081 kb on + strand, within HP15_3055at 3206.148 kb on - strand, within HP15_3055at 3206.250 kb on - strand, within HP15_3055at 3206.291 kb on - strand, within HP15_3055at 3206.311 kb on + strand, within HP15_3055at 3206.395 kb on - strand, within HP15_3055at 3206.543 kb on - strand, within HP15_3055at 3206.622 kb on + strand, within HP15_3055at 3206.668 kb on + strand, within HP15_3055at 3206.697 kb on - strand, within HP15_3055at 3206.726 kb on + strand, within HP15_3055at 3206.726 kb on + strand, within HP15_3055at 3206.726 kb on + strand, within HP15_3055at 3206.836 kb on - strandat 3207.021 kb on + strandat 3207.050 kb on - strandat 3207.100 kb on + strandat 3207.277 kb on - strand, within HP15_3056at 3207.317 kb on - strand, within HP15_3056at 3207.370 kb on - strand, within HP15_3056at 3207.492 kb on + strand, within HP15_3056at 3207.507 kb on - strand, within HP15_3056at 3207.557 kb on + strand, within HP15_3056at 3207.709 kb on - strand, within HP15_3056at 3207.716 kb on - strand, within HP15_3056at 3207.772 kb on + strand, within HP15_3056at 3207.868 kb on - strand, within HP15_3056at 3207.868 kb on - strand, within HP15_3056at 3207.887 kb on - strandat 3208.015 kb on + strandat 3208.015 kb on + strandat 3208.015 kb on + strandat 3208.057 kb on + strandat 3208.065 kb on + strandat 3208.083 kb on - strandat 3208.156 kb on + strand, within HP15_3057at 3208.164 kb on - strand, within HP15_3057at 3208.166 kb on + strand, within HP15_3057at 3208.279 kb on + strand, within HP15_3057at 3208.287 kb on - strand, within HP15_3057at 3208.355 kb on + strand, within HP15_3057at 3208.358 kb on - strand, within HP15_3057at 3208.358 kb on - strand, within HP15_3057at 3208.367 kb on + strand, within HP15_3057at 3208.393 kb on - strand, within HP15_3057at 3208.416 kb on - strand, within HP15_3057at 3208.431 kb on + strand, within HP15_3057at 3208.439 kb on - strand, within HP15_3057at 3208.458 kb on - strand, within HP15_3057at 3208.478 kb on - strand, within HP15_3057at 3208.488 kb on - strand, within HP15_3057at 3208.520 kb on - strand, within HP15_3057at 3208.598 kb on + strand, within HP15_3057at 3208.656 kb on + strand, within HP15_3057at 3208.656 kb on + strand, within HP15_3057at 3208.840 kb on - strand, within HP15_3057at 3208.843 kb on + strand, within HP15_3057at 3208.843 kb on + strand, within HP15_3057at 3208.889 kb on + strand, within HP15_3057at 3208.961 kb on + strand, within HP15_3057

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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3,206,081 + HP15_3055 0.28 +2.7
3,206,081 + HP15_3055 0.28 +2.2
3,206,081 + HP15_3055 0.28 +0.8
3,206,081 + HP15_3055 0.28 +2.1
3,206,148 - HP15_3055 0.34 +1.0
3,206,250 - HP15_3055 0.43 +1.6
3,206,291 - HP15_3055 0.47 +1.9
3,206,311 + HP15_3055 0.49 +0.9
3,206,395 - HP15_3055 0.56 -0.9
3,206,543 - HP15_3055 0.70 +0.6
3,206,622 + HP15_3055 0.77 +1.2
3,206,668 + HP15_3055 0.81 +2.1
3,206,697 - HP15_3055 0.83 +1.0
3,206,726 + HP15_3055 0.86 +0.9
3,206,726 + HP15_3055 0.86 +0.9
3,206,726 + HP15_3055 0.86 +0.0
3,206,836 - +1.2
3,207,021 + +0.9
3,207,050 - +2.1
3,207,100 + +1.2
3,207,277 - HP15_3056 0.25 +1.7
3,207,317 - HP15_3056 0.30 +2.7
3,207,370 - HP15_3056 0.35 +1.0
3,207,492 + HP15_3056 0.49 +1.9
3,207,507 - HP15_3056 0.50 +3.1
3,207,557 + HP15_3056 0.56 +0.7
3,207,709 - HP15_3056 0.72 +0.8
3,207,716 - HP15_3056 0.73 +2.0
3,207,772 + HP15_3056 0.79 +1.0
3,207,868 - HP15_3056 0.89 +0.8
3,207,868 - HP15_3056 0.89 +1.6
3,207,887 - +1.4
3,208,015 + +1.8
3,208,015 + +0.8
3,208,015 + +1.2
3,208,057 + +0.6
3,208,065 + +0.9
3,208,083 - +1.0
3,208,156 + HP15_3057 0.15 +1.1
3,208,164 - HP15_3057 0.16 +1.2
3,208,166 + HP15_3057 0.16 +1.8
3,208,279 + HP15_3057 0.25 +1.8
3,208,287 - HP15_3057 0.25 +2.4
3,208,355 + HP15_3057 0.31 +1.9
3,208,358 - HP15_3057 0.31 +1.8
3,208,358 - HP15_3057 0.31 +1.3
3,208,367 + HP15_3057 0.32 +1.5
3,208,393 - HP15_3057 0.34 +1.2
3,208,416 - HP15_3057 0.35 +0.7
3,208,431 + HP15_3057 0.37 +1.5
3,208,439 - HP15_3057 0.37 +2.1
3,208,458 - HP15_3057 0.39 +1.2
3,208,478 - HP15_3057 0.40 +0.8
3,208,488 - HP15_3057 0.41 +1.3
3,208,520 - HP15_3057 0.44 +1.4
3,208,598 + HP15_3057 0.50 +1.3
3,208,656 + HP15_3057 0.54 +1.7
3,208,656 + HP15_3057 0.54 -0.1
3,208,840 - HP15_3057 0.69 +2.3
3,208,843 + HP15_3057 0.69 +0.7
3,208,843 + HP15_3057 0.69 +3.8
3,208,889 + HP15_3057 0.73 +1.5
3,208,961 + HP15_3057 0.78 +1.2

Or see this region's nucleotide sequence