Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3092

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3090 and Psest_3091 are separated by 48 nucleotidesPsest_3091 and Psest_3092 overlap by 8 nucleotidesPsest_3092 and Psest_3093 overlap by 4 nucleotidesPsest_3093 and Psest_3094 are separated by 91 nucleotides Psest_3090: Psest_3090 - DNA repair protein RecO, at 3,269,331 to 3,270,020 _3090 Psest_3091: Psest_3091 - GTP-binding protein Era, at 3,270,069 to 3,270,980 _3091 Psest_3092: Psest_3092 - ribonuclease III, bacterial, at 3,270,973 to 3,271,662 _3092 Psest_3093: Psest_3093 - hypothetical protein, at 3,271,659 to 3,272,036 _3093 Psest_3094: Psest_3094 - signal peptidase I, bacterial type, at 3,272,128 to 3,272,982 _3094 Position (kb) 3270 3271 3272Strain fitness (log2 ratio) -1 0 1at 3269.983 kb on + strandat 3269.984 kb on - strandat 3271.296 kb on - strand, within Psest_3092at 3271.296 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.672 kb on - strandat 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.847 kb on - strand, within Psest_3093at 3271.922 kb on - strand, within Psest_3093at 3271.922 kb on - strand, within Psest_3093at 3271.931 kb on - strand, within Psest_3093at 3272.047 kb on - strandat 3272.047 kb on - strandat 3272.047 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.087 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
3,269,983 + +0.0
3,269,984 - +0.1
3,271,296 - Psest_3092 0.47 +0.7
3,271,296 - Psest_3092 0.47 +1.7
3,271,576 - Psest_3092 0.87 -0.2
3,271,576 - Psest_3092 0.87 +1.7
3,271,576 - Psest_3092 0.87 +0.4
3,271,576 - Psest_3092 0.87 +0.9
3,271,672 - -0.1
3,271,837 - Psest_3093 0.47 +0.3
3,271,837 - Psest_3093 0.47 +0.9
3,271,837 - Psest_3093 0.47 +0.5
3,271,837 - Psest_3093 0.47 -0.4
3,271,837 - Psest_3093 0.47 -0.1
3,271,837 - Psest_3093 0.47 +0.7
3,271,837 - Psest_3093 0.47 -0.8
3,271,837 - Psest_3093 0.47 +1.1
3,271,837 - Psest_3093 0.47 -0.1
3,271,837 - Psest_3093 0.47 -0.0
3,271,837 - Psest_3093 0.47 +1.4
3,271,837 - Psest_3093 0.47 +0.1
3,271,837 - Psest_3093 0.47 +0.1
3,271,837 - Psest_3093 0.47 -0.5
3,271,847 - Psest_3093 0.50 -0.4
3,271,922 - Psest_3093 0.70 -0.2
3,271,922 - Psest_3093 0.70 -0.4
3,271,931 - Psest_3093 0.72 +0.1
3,272,047 - +0.9
3,272,047 - +0.6
3,272,047 - -0.4
3,272,085 - +0.4
3,272,085 - +1.6
3,272,085 - -0.3
3,272,085 - +0.8
3,272,085 - +0.4
3,272,085 - +0.9
3,272,085 - -0.3
3,272,085 - -0.4
3,272,085 - +0.1
3,272,087 - +1.4

Or see this region's nucleotide sequence