Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2930

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2928 and Psest_2929 are separated by 6 nucleotidesPsest_2929 and Psest_2930 are separated by 64 nucleotidesPsest_2930 and Psest_2931 are separated by 136 nucleotides Psest_2928: Psest_2928 - Subtilisin-like serine proteases, at 3,122,213 to 3,123,991 _2928 Psest_2929: Psest_2929 - Transcriptional regulators, at 3,123,998 to 3,124,471 _2929 Psest_2930: Psest_2930 - asparagine synthase (glutamine-hydrolyzing), at 3,124,536 to 3,126,419 _2930 Psest_2931: Psest_2931 - GNAT-family acetyltransferase TIGR03103, at 3,126,556 to 3,128,295 _2931 Position (kb) 3124 3125 3126 3127Strain fitness (log2 ratio) -2 -1 0 1 2at 3123.717 kb on - strand, within Psest_2928at 3123.990 kb on - strandat 3124.495 kb on - strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.657 kb on + strandat 3124.658 kb on - strandat 3124.658 kb on - strandat 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.882 kb on - strand, within Psest_2930at 3124.882 kb on - strand, within Psest_2930at 3124.882 kb on - strand, within Psest_2930at 3124.882 kb on - strand, within Psest_2930at 3125.039 kb on + strand, within Psest_2930at 3125.088 kb on + strand, within Psest_2930at 3125.088 kb on + strand, within Psest_2930at 3125.088 kb on + strand, within Psest_2930at 3125.193 kb on + strand, within Psest_2930at 3125.193 kb on + strand, within Psest_2930at 3125.193 kb on + strand, within Psest_2930at 3125.193 kb on + strand, within Psest_2930at 3125.193 kb on + strand, within Psest_2930at 3125.194 kb on - strand, within Psest_2930at 3125.194 kb on - strand, within Psest_2930at 3125.194 kb on - strand, within Psest_2930at 3125.194 kb on - strand, within Psest_2930at 3125.352 kb on + strand, within Psest_2930at 3125.352 kb on + strand, within Psest_2930at 3125.352 kb on + strand, within Psest_2930at 3125.353 kb on - strand, within Psest_2930at 3125.353 kb on - strand, within Psest_2930at 3125.353 kb on - strand, within Psest_2930at 3125.571 kb on + strand, within Psest_2930at 3125.572 kb on - strand, within Psest_2930at 3125.709 kb on + strand, within Psest_2930at 3125.709 kb on + strand, within Psest_2930at 3125.709 kb on + strand, within Psest_2930at 3125.710 kb on - strand, within Psest_2930at 3125.710 kb on - strand, within Psest_2930at 3125.710 kb on - strand, within Psest_2930at 3125.710 kb on - strand, within Psest_2930at 3125.710 kb on - strand, within Psest_2930at 3125.710 kb on - strand, within Psest_2930at 3125.835 kb on + strand, within Psest_2930at 3125.836 kb on - strand, within Psest_2930at 3125.862 kb on + strand, within Psest_2930at 3125.871 kb on + strand, within Psest_2930at 3125.871 kb on + strand, within Psest_2930at 3125.872 kb on - strand, within Psest_2930at 3126.141 kb on + strand, within Psest_2930at 3126.141 kb on + strand, within Psest_2930at 3126.141 kb on + strand, within Psest_2930at 3126.141 kb on + strand, within Psest_2930at 3126.141 kb on + strand, within Psest_2930at 3126.141 kb on + strand, within Psest_2930at 3126.141 kb on + strand, within Psest_2930at 3126.142 kb on - strand, within Psest_2930at 3126.142 kb on - strand, within Psest_2930at 3126.142 kb on - strand, within Psest_2930at 3126.142 kb on - strand, within Psest_2930at 3126.142 kb on - strand, within Psest_2930at 3126.142 kb on - strand, within Psest_2930at 3126.142 kb on - strand, within Psest_2930at 3126.204 kb on + strand, within Psest_2930at 3126.204 kb on + strand, within Psest_2930at 3126.205 kb on - strand, within Psest_2930at 3126.205 kb on - strand, within Psest_2930at 3126.297 kb on + strandat 3126.297 kb on + strandat 3126.297 kb on + strandat 3126.394 kb on + strandat 3126.394 kb on + strandat 3126.394 kb on + strandat 3126.394 kb on + strandat 3126.394 kb on + strandat 3126.394 kb on + strandat 3126.394 kb on + strandat 3126.394 kb on + strandat 3126.394 kb on + strandat 3126.395 kb on - strandat 3126.395 kb on - strandat 3126.395 kb on - strandat 3126.395 kb on - strandat 3126.395 kb on - strandat 3126.395 kb on - strandat 3126.418 kb on - strandat 3126.420 kb on + strandat 3126.420 kb on + strandat 3126.420 kb on + strandat 3126.420 kb on + strandat 3126.421 kb on - strandat 3126.537 kb on + strandat 3126.537 kb on + strandat 3126.537 kb on + strandat 3126.537 kb on + strandat 3126.537 kb on + strandat 3126.537 kb on + strandat 3126.538 kb on - strandat 3126.538 kb on - strandat 3126.538 kb on - strandat 3126.538 kb on - strandat 3126.611 kb on - strandat 3126.611 kb on - strandat 3126.713 kb on - strandat 3126.713 kb on - strandat 3126.781 kb on + strand, within Psest_2931at 3126.781 kb on + strand, within Psest_2931at 3126.781 kb on + strand, within Psest_2931at 3126.781 kb on + strand, within Psest_2931at 3126.781 kb on + strand, within Psest_2931at 3126.781 kb on + strand, within Psest_2931at 3126.781 kb on + strand, within Psest_2931at 3126.781 kb on + strand, within Psest_2931at 3126.781 kb on + strand, within Psest_2931at 3126.782 kb on - strand, within Psest_2931at 3126.782 kb on - strand, within Psest_2931at 3126.782 kb on - strand, within Psest_2931at 3126.782 kb on - strand, within Psest_2931at 3126.812 kb on - strand, within Psest_2931at 3126.812 kb on - strand, within Psest_2931at 3126.812 kb on - strand, within Psest_2931at 3127.119 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.201 kb on + strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.202 kb on - strand, within Psest_2931at 3127.203 kb on + strand, within Psest_2931at 3127.204 kb on - strand, within Psest_2931at 3127.204 kb on - strand, within Psest_2931at 3127.204 kb on - strand, within Psest_2931at 3127.222 kb on + strand, within Psest_2931at 3127.223 kb on - strand, within Psest_2931

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,123,717 - Psest_2928 0.85 -0.2
3,123,990 - +0.0
3,124,495 - +0.4
3,124,646 + +0.3
3,124,646 + +0.9
3,124,646 + -2.7
3,124,646 + +0.3
3,124,646 + +0.7
3,124,646 + +0.3
3,124,646 + -2.0
3,124,646 + +0.2
3,124,646 + +1.2
3,124,646 + +1.7
3,124,646 + -0.8
3,124,646 + -1.3
3,124,646 + -0.6
3,124,647 - -0.0
3,124,647 - +0.2
3,124,647 - +0.2
3,124,647 - -0.4
3,124,647 - -1.4
3,124,647 - -0.2
3,124,647 - +0.6
3,124,647 - +0.6
3,124,647 - +0.0
3,124,647 - +1.3
3,124,647 - +1.2
3,124,647 - -0.4
3,124,647 - +1.1
3,124,647 - +0.2
3,124,657 + -0.0
3,124,658 - +0.2
3,124,658 - +1.5
3,124,881 + Psest_2930 0.18 -0.2
3,124,881 + Psest_2930 0.18 +1.0
3,124,881 + Psest_2930 0.18 -0.0
3,124,881 + Psest_2930 0.18 +1.0
3,124,881 + Psest_2930 0.18 -1.1
3,124,881 + Psest_2930 0.18 +0.3
3,124,881 + Psest_2930 0.18 -0.3
3,124,882 - Psest_2930 0.18 +0.6
3,124,882 - Psest_2930 0.18 -0.3
3,124,882 - Psest_2930 0.18 -0.3
3,124,882 - Psest_2930 0.18 -0.3
3,125,039 + Psest_2930 0.27 -0.5
3,125,088 + Psest_2930 0.29 -1.1
3,125,088 + Psest_2930 0.29 +0.7
3,125,088 + Psest_2930 0.29 +0.0
3,125,193 + Psest_2930 0.35 +1.0
3,125,193 + Psest_2930 0.35 -0.7
3,125,193 + Psest_2930 0.35 -0.5
3,125,193 + Psest_2930 0.35 +0.6
3,125,193 + Psest_2930 0.35 -0.1
3,125,194 - Psest_2930 0.35 +0.0
3,125,194 - Psest_2930 0.35 -0.2
3,125,194 - Psest_2930 0.35 +1.2
3,125,194 - Psest_2930 0.35 +0.3
3,125,352 + Psest_2930 0.43 +0.3
3,125,352 + Psest_2930 0.43 +0.0
3,125,352 + Psest_2930 0.43 +0.6
3,125,353 - Psest_2930 0.43 -1.0
3,125,353 - Psest_2930 0.43 +0.7
3,125,353 - Psest_2930 0.43 -0.6
3,125,571 + Psest_2930 0.55 -0.5
3,125,572 - Psest_2930 0.55 -2.2
3,125,709 + Psest_2930 0.62 +0.0
3,125,709 + Psest_2930 0.62 -0.8
3,125,709 + Psest_2930 0.62 -0.3
3,125,710 - Psest_2930 0.62 +0.6
3,125,710 - Psest_2930 0.62 -1.4
3,125,710 - Psest_2930 0.62 +0.4
3,125,710 - Psest_2930 0.62 +0.7
3,125,710 - Psest_2930 0.62 +0.8
3,125,710 - Psest_2930 0.62 +0.2
3,125,835 + Psest_2930 0.69 -0.3
3,125,836 - Psest_2930 0.69 +1.0
3,125,862 + Psest_2930 0.70 +1.2
3,125,871 + Psest_2930 0.71 -0.4
3,125,871 + Psest_2930 0.71 -1.0
3,125,872 - Psest_2930 0.71 +1.8
3,126,141 + Psest_2930 0.85 -0.5
3,126,141 + Psest_2930 0.85 -0.5
3,126,141 + Psest_2930 0.85 -0.3
3,126,141 + Psest_2930 0.85 +0.1
3,126,141 + Psest_2930 0.85 -0.4
3,126,141 + Psest_2930 0.85 -0.9
3,126,141 + Psest_2930 0.85 -1.1
3,126,142 - Psest_2930 0.85 -0.1
3,126,142 - Psest_2930 0.85 -0.1
3,126,142 - Psest_2930 0.85 -1.1
3,126,142 - Psest_2930 0.85 -0.6
3,126,142 - Psest_2930 0.85 -0.5
3,126,142 - Psest_2930 0.85 +0.8
3,126,142 - Psest_2930 0.85 -0.6
3,126,204 + Psest_2930 0.89 +0.4
3,126,204 + Psest_2930 0.89 -0.1
3,126,205 - Psest_2930 0.89 +0.6
3,126,205 - Psest_2930 0.89 -0.4
3,126,297 + +0.3
3,126,297 + +0.5
3,126,297 + -0.0
3,126,394 + +0.1
3,126,394 + +0.2
3,126,394 + -0.0
3,126,394 + -0.0
3,126,394 + +0.7
3,126,394 + -1.5
3,126,394 + -0.5
3,126,394 + +0.4
3,126,394 + -1.1
3,126,395 - -0.6
3,126,395 - -0.3
3,126,395 - +0.5
3,126,395 - +2.0
3,126,395 - -1.3
3,126,395 - +0.0
3,126,418 - +0.3
3,126,420 + -0.0
3,126,420 + +0.4
3,126,420 + -2.1
3,126,420 + +0.4
3,126,421 - -1.8
3,126,537 + -0.1
3,126,537 + -2.0
3,126,537 + -0.4
3,126,537 + +2.0
3,126,537 + -1.6
3,126,537 + +0.5
3,126,538 - -0.4
3,126,538 - -0.1
3,126,538 - -0.1
3,126,538 - -0.1
3,126,611 - -1.4
3,126,611 - -2.3
3,126,713 - -0.3
3,126,713 - -0.0
3,126,781 + Psest_2931 0.13 -0.6
3,126,781 + Psest_2931 0.13 -1.3
3,126,781 + Psest_2931 0.13 +0.8
3,126,781 + Psest_2931 0.13 -0.5
3,126,781 + Psest_2931 0.13 +0.0
3,126,781 + Psest_2931 0.13 +0.4
3,126,781 + Psest_2931 0.13 +0.0
3,126,781 + Psest_2931 0.13 -0.2
3,126,781 + Psest_2931 0.13 -0.4
3,126,782 - Psest_2931 0.13 +0.1
3,126,782 - Psest_2931 0.13 +0.2
3,126,782 - Psest_2931 0.13 -0.0
3,126,782 - Psest_2931 0.13 +0.3
3,126,812 - Psest_2931 0.15 +0.7
3,126,812 - Psest_2931 0.15 -1.0
3,126,812 - Psest_2931 0.15 -0.1
3,127,119 + Psest_2931 0.32 +0.2
3,127,201 + Psest_2931 0.37 -0.5
3,127,201 + Psest_2931 0.37 +1.0
3,127,201 + Psest_2931 0.37 -0.3
3,127,201 + Psest_2931 0.37 -0.4
3,127,201 + Psest_2931 0.37 -0.5
3,127,201 + Psest_2931 0.37 -0.6
3,127,201 + Psest_2931 0.37 +0.1
3,127,201 + Psest_2931 0.37 +0.1
3,127,201 + Psest_2931 0.37 +0.9
3,127,201 + Psest_2931 0.37 -0.7
3,127,201 + Psest_2931 0.37 -0.1
3,127,201 + Psest_2931 0.37 -0.2
3,127,201 + Psest_2931 0.37 +0.5
3,127,201 + Psest_2931 0.37 -1.1
3,127,202 - Psest_2931 0.37 -0.5
3,127,202 - Psest_2931 0.37 -1.2
3,127,202 - Psest_2931 0.37 -0.1
3,127,202 - Psest_2931 0.37 -0.5
3,127,202 - Psest_2931 0.37 -0.2
3,127,202 - Psest_2931 0.37 -0.2
3,127,202 - Psest_2931 0.37 +0.6
3,127,202 - Psest_2931 0.37 +0.2
3,127,202 - Psest_2931 0.37 +1.0
3,127,202 - Psest_2931 0.37 -0.7
3,127,202 - Psest_2931 0.37 +0.9
3,127,202 - Psest_2931 0.37 -0.3
3,127,202 - Psest_2931 0.37 +0.1
3,127,202 - Psest_2931 0.37 +0.4
3,127,202 - Psest_2931 0.37 +1.0
3,127,202 - Psest_2931 0.37 +0.1
3,127,202 - Psest_2931 0.37 +0.8
3,127,202 - Psest_2931 0.37 -1.0
3,127,202 - Psest_2931 0.37 -0.4
3,127,202 - Psest_2931 0.37 +0.0
3,127,202 - Psest_2931 0.37 +0.1
3,127,203 + Psest_2931 0.37 -0.3
3,127,204 - Psest_2931 0.37 +0.2
3,127,204 - Psest_2931 0.37 -1.0
3,127,204 - Psest_2931 0.37 -0.1
3,127,222 + Psest_2931 0.38 +0.0
3,127,223 - Psest_2931 0.38 +0.0

Or see this region's nucleotide sequence