Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2894

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2893 and Psest_2894 are separated by 246 nucleotidesPsest_2894 and Psest_2895 are separated by 49 nucleotides Psest_2893: Psest_2893 - Arabinose efflux permease, at 3,089,230 to 3,090,708 _2893 Psest_2894: Psest_2894 - addiction module antidote protein, HigA family, at 3,090,955 to 3,091,335 _2894 Psest_2895: Psest_2895 - Uncharacterized conserved protein, at 3,091,385 to 3,092,956 _2895 Position (kb) 3090 3091 3092Strain fitness (log2 ratio) -2 -1 0 1 2at 3090.074 kb on + strand, within Psest_2893at 3090.074 kb on + strand, within Psest_2893at 3090.075 kb on - strand, within Psest_2893at 3090.075 kb on - strand, within Psest_2893at 3090.075 kb on - strand, within Psest_2893at 3090.167 kb on + strand, within Psest_2893at 3090.167 kb on + strand, within Psest_2893at 3090.223 kb on - strand, within Psest_2893at 3090.259 kb on + strand, within Psest_2893at 3090.259 kb on + strand, within Psest_2893at 3090.259 kb on + strand, within Psest_2893at 3090.260 kb on - strand, within Psest_2893at 3090.260 kb on - strand, within Psest_2893at 3090.260 kb on - strand, within Psest_2893at 3090.419 kb on - strand, within Psest_2893at 3090.419 kb on - strand, within Psest_2893at 3090.476 kb on - strand, within Psest_2893at 3090.476 kb on - strand, within Psest_2893at 3090.874 kb on + strandat 3090.875 kb on - strandat 3090.875 kb on - strandat 3090.875 kb on - strandat 3090.875 kb on - strandat 3090.875 kb on - strandat 3090.875 kb on - strandat 3090.875 kb on - strandat 3090.914 kb on - strandat 3090.951 kb on - strandat 3091.049 kb on + strand, within Psest_2894at 3091.050 kb on - strand, within Psest_2894at 3091.050 kb on - strand, within Psest_2894at 3091.244 kb on - strand, within Psest_2894at 3091.297 kb on - strand, within Psest_2894at 3091.329 kb on + strandat 3091.330 kb on - strandat 3091.330 kb on - strandat 3091.330 kb on - strandat 3091.330 kb on - strandat 3091.334 kb on - strandat 3091.392 kb on - strandat 3091.392 kb on - strandat 3091.433 kb on - strandat 3091.619 kb on + strand, within Psest_2895at 3091.619 kb on + strand, within Psest_2895at 3091.682 kb on - strand, within Psest_2895at 3091.682 kb on - strand, within Psest_2895at 3091.778 kb on - strand, within Psest_2895at 3091.820 kb on - strand, within Psest_2895at 3091.823 kb on + strand, within Psest_2895at 3092.096 kb on - strand, within Psest_2895

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,090,074 + Psest_2893 0.57 -0.4
3,090,074 + Psest_2893 0.57 +0.4
3,090,075 - Psest_2893 0.57 +1.3
3,090,075 - Psest_2893 0.57 +0.4
3,090,075 - Psest_2893 0.57 -0.0
3,090,167 + Psest_2893 0.63 +0.8
3,090,167 + Psest_2893 0.63 -0.7
3,090,223 - Psest_2893 0.67 +0.5
3,090,259 + Psest_2893 0.70 -0.8
3,090,259 + Psest_2893 0.70 +1.3
3,090,259 + Psest_2893 0.70 -0.0
3,090,260 - Psest_2893 0.70 +0.9
3,090,260 - Psest_2893 0.70 -0.1
3,090,260 - Psest_2893 0.70 +0.8
3,090,419 - Psest_2893 0.80 +0.6
3,090,419 - Psest_2893 0.80 -0.6
3,090,476 - Psest_2893 0.84 +1.9
3,090,476 - Psest_2893 0.84 +0.8
3,090,874 + +0.7
3,090,875 - -1.3
3,090,875 - -2.1
3,090,875 - +1.3
3,090,875 - -0.0
3,090,875 - +0.0
3,090,875 - +0.2
3,090,875 - -0.1
3,090,914 - +0.0
3,090,951 - +0.7
3,091,049 + Psest_2894 0.25 +0.5
3,091,050 - Psest_2894 0.25 +0.2
3,091,050 - Psest_2894 0.25 +0.0
3,091,244 - Psest_2894 0.76 +1.2
3,091,297 - Psest_2894 0.90 +1.5
3,091,329 + +0.3
3,091,330 - -0.5
3,091,330 - +0.0
3,091,330 - -1.1
3,091,330 - -0.5
3,091,334 - +0.6
3,091,392 - -0.3
3,091,392 - +0.2
3,091,433 - +0.5
3,091,619 + Psest_2895 0.15 -2.0
3,091,619 + Psest_2895 0.15 -2.3
3,091,682 - Psest_2895 0.19 +1.2
3,091,682 - Psest_2895 0.19 +1.0
3,091,778 - Psest_2895 0.25 +0.3
3,091,820 - Psest_2895 0.28 +0.7
3,091,823 + Psest_2895 0.28 -0.0
3,092,096 - Psest_2895 0.45 +0.2

Or see this region's nucleotide sequence