Strain Fitness in Marinobacter adhaerens HP15 around HP15_2675

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2673 and HP15_2674 are separated by 59 nucleotidesHP15_2674 and HP15_2675 are separated by 55 nucleotidesHP15_2675 and HP15_2676 are separated by 146 nucleotides HP15_2673: HP15_2673 - DedA, at 2,823,027 to 2,823,761 _2673 HP15_2674: HP15_2674 - conserved hypothetical protein, at 2,823,821 to 2,824,060 _2674 HP15_2675: HP15_2675 - pseudouridine synthase, Rsu, at 2,824,116 to 2,824,814 _2675 HP15_2676: HP15_2676 - proton/sodium-glutamate symport protein, at 2,824,961 to 2,826,241 _2676 Position (kb) 2824 2825Strain fitness (log2 ratio) -2 -1 0 1 2at 2823.156 kb on + strand, within HP15_2673at 2823.156 kb on + strand, within HP15_2673at 2823.156 kb on + strand, within HP15_2673at 2823.185 kb on + strand, within HP15_2673at 2823.193 kb on - strand, within HP15_2673at 2823.229 kb on - strand, within HP15_2673at 2823.482 kb on + strand, within HP15_2673at 2823.497 kb on + strand, within HP15_2673at 2823.509 kb on - strand, within HP15_2673at 2823.554 kb on + strand, within HP15_2673at 2823.679 kb on + strand, within HP15_2673at 2823.679 kb on - strand, within HP15_2673at 2823.771 kb on - strandat 2823.808 kb on + strandat 2823.808 kb on + strandat 2823.838 kb on - strandat 2823.873 kb on + strand, within HP15_2674at 2823.873 kb on + strand, within HP15_2674at 2823.881 kb on - strand, within HP15_2674at 2823.979 kb on - strand, within HP15_2674at 2824.310 kb on + strand, within HP15_2675at 2824.378 kb on + strand, within HP15_2675at 2824.378 kb on + strand, within HP15_2675at 2824.378 kb on + strand, within HP15_2675at 2824.386 kb on - strand, within HP15_2675at 2824.386 kb on - strand, within HP15_2675at 2824.434 kb on + strand, within HP15_2675at 2824.473 kb on - strand, within HP15_2675at 2824.514 kb on + strand, within HP15_2675at 2824.514 kb on + strand, within HP15_2675at 2824.606 kb on - strand, within HP15_2675at 2824.718 kb on - strand, within HP15_2675at 2824.772 kb on - strandat 2824.806 kb on - strandat 2824.890 kb on - strandat 2824.977 kb on + strandat 2824.977 kb on + strandat 2824.985 kb on - strandat 2825.026 kb on + strandat 2825.096 kb on + strand, within HP15_2676at 2825.213 kb on - strand, within HP15_2676at 2825.247 kb on - strand, within HP15_2676at 2825.303 kb on + strand, within HP15_2676at 2825.335 kb on - strand, within HP15_2676at 2825.374 kb on + strand, within HP15_2676at 2825.374 kb on + strand, within HP15_2676at 2825.382 kb on - strand, within HP15_2676at 2825.382 kb on - strand, within HP15_2676at 2825.403 kb on - strandat 2825.477 kb on - strand, within HP15_2676at 2825.519 kb on - strand, within HP15_2676at 2825.552 kb on + strand, within HP15_2676at 2825.560 kb on - strand, within HP15_2676at 2825.726 kb on + strand, within HP15_2676

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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2,823,156 + HP15_2673 0.18 -0.5
2,823,156 + HP15_2673 0.18 -0.5
2,823,156 + HP15_2673 0.18 +0.5
2,823,185 + HP15_2673 0.21 +2.3
2,823,193 - HP15_2673 0.23 -0.6
2,823,229 - HP15_2673 0.27 +0.4
2,823,482 + HP15_2673 0.62 -0.8
2,823,497 + HP15_2673 0.64 +0.6
2,823,509 - HP15_2673 0.66 +0.4
2,823,554 + HP15_2673 0.72 -0.2
2,823,679 + HP15_2673 0.89 +1.1
2,823,679 - HP15_2673 0.89 -0.1
2,823,771 - -0.5
2,823,808 + -0.9
2,823,808 + -0.4
2,823,838 - +0.3
2,823,873 + HP15_2674 0.22 -0.5
2,823,873 + HP15_2674 0.22 -0.3
2,823,881 - HP15_2674 0.25 +0.9
2,823,979 - HP15_2674 0.66 +0.9
2,824,310 + HP15_2675 0.28 -0.4
2,824,378 + HP15_2675 0.37 +0.3
2,824,378 + HP15_2675 0.37 +0.8
2,824,378 + HP15_2675 0.37 -0.5
2,824,386 - HP15_2675 0.39 +1.2
2,824,386 - HP15_2675 0.39 +0.1
2,824,434 + HP15_2675 0.45 +0.5
2,824,473 - HP15_2675 0.51 -0.9
2,824,514 + HP15_2675 0.57 -0.0
2,824,514 + HP15_2675 0.57 +0.2
2,824,606 - HP15_2675 0.70 +0.3
2,824,718 - HP15_2675 0.86 +0.6
2,824,772 - -0.7
2,824,806 - -1.1
2,824,890 - -0.7
2,824,977 + +0.1
2,824,977 + +0.9
2,824,985 - -1.8
2,825,026 + -0.4
2,825,096 + HP15_2676 0.11 -0.6
2,825,213 - HP15_2676 0.20 -0.6
2,825,247 - HP15_2676 0.22 +0.0
2,825,303 + HP15_2676 0.27 +1.1
2,825,335 - HP15_2676 0.29 +0.2
2,825,374 + HP15_2676 0.32 +0.5
2,825,374 + HP15_2676 0.32 +0.2
2,825,382 - HP15_2676 0.33 -1.1
2,825,382 - HP15_2676 0.33 -0.2
2,825,403 - +0.9
2,825,477 - HP15_2676 0.40 +1.7
2,825,519 - HP15_2676 0.44 -0.6
2,825,552 + HP15_2676 0.46 -0.8
2,825,560 - HP15_2676 0.47 -0.3
2,825,726 + HP15_2676 0.60 -0.4

Or see this region's nucleotide sequence