Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2748

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2747 and Psest_2748 are separated by 69 nucleotidesPsest_2748 and Psest_2749 overlap by 4 nucleotidesPsest_2749 and Psest_2750 are separated by 54 nucleotides Psest_2747: Psest_2747 - Putative NADPH-quinone reductase (modulator of drug activity B), at 2,938,324 to 2,939,106 _2747 Psest_2748: Psest_2748 - Transcriptional regulator, at 2,939,176 to 2,940,081 _2748 Psest_2749: Psest_2749 - Predicted transcriptional regulators, at 2,940,078 to 2,940,461 _2749 Psest_2750: Psest_2750 - Nucleoside-diphosphate-sugar epimerases, at 2,940,516 to 2,941,607 _2750 Position (kb) 2939 2940 2941Strain fitness (log2 ratio) -2 -1 0 1 2at 2938.336 kb on + strandat 2938.336 kb on + strandat 2938.336 kb on + strandat 2938.336 kb on + strandat 2938.336 kb on + strandat 2938.337 kb on - strandat 2938.337 kb on - strandat 2938.337 kb on - strandat 2938.337 kb on - strandat 2938.337 kb on - strandat 2938.579 kb on + strand, within Psest_2747at 2938.579 kb on + strand, within Psest_2747at 2938.579 kb on + strand, within Psest_2747at 2938.579 kb on + strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.580 kb on - strand, within Psest_2747at 2938.629 kb on - strand, within Psest_2747at 2938.740 kb on - strand, within Psest_2747at 2938.740 kb on - strand, within Psest_2747at 2938.758 kb on - strand, within Psest_2747at 2938.758 kb on - strand, within Psest_2747at 2938.758 kb on - strand, within Psest_2747at 2938.758 kb on - strand, within Psest_2747at 2938.988 kb on + strand, within Psest_2747at 2938.988 kb on + strand, within Psest_2747at 2938.988 kb on + strand, within Psest_2747at 2938.988 kb on + strand, within Psest_2747at 2938.989 kb on - strand, within Psest_2747at 2938.989 kb on - strand, within Psest_2747at 2939.087 kb on + strandat 2939.088 kb on - strandat 2939.088 kb on - strandat 2939.159 kb on + strandat 2939.172 kb on + strandat 2939.354 kb on + strand, within Psest_2748at 2939.704 kb on + strand, within Psest_2748at 2940.072 kb on + strandat 2940.072 kb on + strandat 2940.072 kb on + strandat 2940.079 kb on + strandat 2940.079 kb on + strandat 2940.080 kb on - strandat 2940.152 kb on - strand, within Psest_2749at 2940.152 kb on - strand, within Psest_2749at 2940.152 kb on - strand, within Psest_2749at 2940.152 kb on - strand, within Psest_2749at 2940.202 kb on + strand, within Psest_2749at 2940.202 kb on + strand, within Psest_2749at 2940.203 kb on - strand, within Psest_2749at 2940.203 kb on - strand, within Psest_2749at 2940.203 kb on - strand, within Psest_2749at 2940.203 kb on - strand, within Psest_2749at 2940.203 kb on - strand, within Psest_2749at 2940.548 kb on + strandat 2940.548 kb on + strandat 2940.549 kb on - strandat 2940.549 kb on - strandat 2940.888 kb on + strand, within Psest_2750at 2940.889 kb on - strand, within Psest_2750at 2940.889 kb on - strand, within Psest_2750at 2940.978 kb on + strand, within Psest_2750at 2940.979 kb on - strand, within Psest_2750at 2940.981 kb on + strand, within Psest_2750at 2940.982 kb on - strand, within Psest_2750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
2,938,336 + +0.3
2,938,336 + +0.8
2,938,336 + -0.5
2,938,336 + -0.6
2,938,336 + -0.7
2,938,337 - -0.8
2,938,337 - -1.6
2,938,337 - +0.4
2,938,337 - -0.5
2,938,337 - +0.1
2,938,579 + Psest_2747 0.33 -0.0
2,938,579 + Psest_2747 0.33 -0.0
2,938,579 + Psest_2747 0.33 +1.4
2,938,579 + Psest_2747 0.33 +0.1
2,938,580 - Psest_2747 0.33 +0.4
2,938,580 - Psest_2747 0.33 -0.3
2,938,580 - Psest_2747 0.33 -0.1
2,938,580 - Psest_2747 0.33 -0.9
2,938,580 - Psest_2747 0.33 -0.2
2,938,629 - Psest_2747 0.39 -0.3
2,938,740 - Psest_2747 0.53 -0.0
2,938,740 - Psest_2747 0.53 -0.8
2,938,758 - Psest_2747 0.55 +0.0
2,938,758 - Psest_2747 0.55 -0.1
2,938,758 - Psest_2747 0.55 -1.1
2,938,758 - Psest_2747 0.55 +0.4
2,938,988 + Psest_2747 0.85 +0.1
2,938,988 + Psest_2747 0.85 +0.8
2,938,988 + Psest_2747 0.85 -2.3
2,938,988 + Psest_2747 0.85 -0.4
2,938,989 - Psest_2747 0.85 -0.2
2,938,989 - Psest_2747 0.85 +0.6
2,939,087 + -0.5
2,939,088 - -1.8
2,939,088 - +0.5
2,939,159 + -0.8
2,939,172 + +0.1
2,939,354 + Psest_2748 0.20 +0.4
2,939,704 + Psest_2748 0.58 +1.1
2,940,072 + -1.1
2,940,072 + -0.2
2,940,072 + -0.2
2,940,079 + +0.8
2,940,079 + +2.3
2,940,080 - +1.0
2,940,152 - Psest_2749 0.19 +0.5
2,940,152 - Psest_2749 0.19 -0.6
2,940,152 - Psest_2749 0.19 +0.4
2,940,152 - Psest_2749 0.19 -0.3
2,940,202 + Psest_2749 0.32 +0.7
2,940,202 + Psest_2749 0.32 -0.8
2,940,203 - Psest_2749 0.33 +0.6
2,940,203 - Psest_2749 0.33 -1.1
2,940,203 - Psest_2749 0.33 +0.8
2,940,203 - Psest_2749 0.33 +0.1
2,940,203 - Psest_2749 0.33 +1.4
2,940,548 + +0.4
2,940,548 + +0.2
2,940,549 - +2.3
2,940,549 - +0.6
2,940,888 + Psest_2750 0.34 -2.0
2,940,889 - Psest_2750 0.34 +0.6
2,940,889 - Psest_2750 0.34 -0.2
2,940,978 + Psest_2750 0.42 -0.0
2,940,979 - Psest_2750 0.42 -0.3
2,940,981 + Psest_2750 0.43 +0.0
2,940,982 - Psest_2750 0.43 +0.4

Or see this region's nucleotide sequence