Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2626

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2625 and Psest_2626 are separated by 54 nucleotidesPsest_2626 and Psest_2627 are separated by 12 nucleotides Psest_2625: Psest_2625 - Flp pilus assembly protein, secretin CpaC, at 2,806,866 to 2,808,380 _2625 Psest_2626: Psest_2626 - Flp pilus assembly protein CpaB, at 2,808,435 to 2,809,244 _2626 Psest_2627: Psest_2627 - hypothetical protein, at 2,809,257 to 2,810,576 _2627 Position (kb) 2808 2809 2810Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2807.649 kb on + strand, within Psest_2625at 2807.649 kb on + strand, within Psest_2625at 2807.650 kb on - strand, within Psest_2625at 2807.650 kb on - strand, within Psest_2625at 2807.650 kb on - strand, within Psest_2625at 2807.890 kb on + strand, within Psest_2625at 2807.890 kb on + strand, within Psest_2625at 2807.891 kb on - strand, within Psest_2625at 2808.127 kb on + strand, within Psest_2625at 2808.127 kb on + strand, within Psest_2625at 2808.128 kb on - strand, within Psest_2625at 2808.128 kb on - strand, within Psest_2625at 2808.226 kb on + strand, within Psest_2625at 2808.226 kb on + strand, within Psest_2625at 2808.226 kb on + strand, within Psest_2625at 2808.226 kb on + strand, within Psest_2625at 2808.227 kb on - strand, within Psest_2625at 2808.227 kb on - strand, within Psest_2625at 2808.227 kb on - strand, within Psest_2625at 2808.354 kb on + strandat 2808.354 kb on + strandat 2808.360 kb on + strandat 2808.360 kb on + strandat 2808.360 kb on + strandat 2808.361 kb on - strandat 2808.361 kb on - strandat 2808.361 kb on - strandat 2808.361 kb on - strandat 2808.361 kb on - strandat 2808.361 kb on - strandat 2808.699 kb on + strand, within Psest_2626at 2808.699 kb on + strand, within Psest_2626at 2808.700 kb on - strand, within Psest_2626at 2808.702 kb on + strand, within Psest_2626at 2809.226 kb on - strandat 2809.226 kb on - strandat 2809.232 kb on + strandat 2809.285 kb on + strandat 2809.285 kb on + strandat 2809.285 kb on + strandat 2809.286 kb on - strandat 2809.501 kb on + strand, within Psest_2627at 2809.502 kb on - strand, within Psest_2627at 2809.780 kb on + strand, within Psest_2627at 2809.780 kb on + strand, within Psest_2627at 2809.896 kb on + strand, within Psest_2627at 2809.897 kb on - strand, within Psest_2627at 2809.897 kb on - strand, within Psest_2627at 2809.948 kb on + strand, within Psest_2627at 2810.035 kb on + strand, within Psest_2627at 2810.035 kb on + strand, within Psest_2627at 2810.036 kb on - strand, within Psest_2627at 2810.036 kb on - strand, within Psest_2627at 2810.036 kb on - strand, within Psest_2627at 2810.036 kb on - strand, within Psest_2627at 2810.036 kb on - strand, within Psest_2627at 2810.036 kb on - strand, within Psest_2627at 2810.062 kb on + strand, within Psest_2627at 2810.062 kb on + strand, within Psest_2627at 2810.062 kb on + strand, within Psest_2627at 2810.062 kb on + strand, within Psest_2627at 2810.062 kb on + strand, within Psest_2627at 2810.063 kb on - strand, within Psest_2627at 2810.063 kb on - strand, within Psest_2627at 2810.063 kb on - strand, within Psest_2627at 2810.063 kb on - strand, within Psest_2627at 2810.063 kb on - strand, within Psest_2627at 2810.140 kb on + strand, within Psest_2627at 2810.243 kb on - strand, within Psest_2627

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,807,649 + Psest_2625 0.52 +1.0
2,807,649 + Psest_2625 0.52 +0.1
2,807,650 - Psest_2625 0.52 -1.0
2,807,650 - Psest_2625 0.52 -1.3
2,807,650 - Psest_2625 0.52 +0.1
2,807,890 + Psest_2625 0.68 +0.2
2,807,890 + Psest_2625 0.68 +0.4
2,807,891 - Psest_2625 0.68 -2.8
2,808,127 + Psest_2625 0.83 -0.7
2,808,127 + Psest_2625 0.83 +0.5
2,808,128 - Psest_2625 0.83 +1.0
2,808,128 - Psest_2625 0.83 -0.6
2,808,226 + Psest_2625 0.90 +0.1
2,808,226 + Psest_2625 0.90 -0.1
2,808,226 + Psest_2625 0.90 +0.3
2,808,226 + Psest_2625 0.90 -0.2
2,808,227 - Psest_2625 0.90 -0.3
2,808,227 - Psest_2625 0.90 +0.4
2,808,227 - Psest_2625 0.90 +0.3
2,808,354 + +0.5
2,808,354 + +0.8
2,808,360 + +0.5
2,808,360 + +1.6
2,808,360 + -0.0
2,808,361 - +0.4
2,808,361 - +0.5
2,808,361 - -0.1
2,808,361 - +0.8
2,808,361 - -0.7
2,808,361 - +0.2
2,808,699 + Psest_2626 0.33 +1.1
2,808,699 + Psest_2626 0.33 +0.6
2,808,700 - Psest_2626 0.33 -0.4
2,808,702 + Psest_2626 0.33 +1.2
2,809,226 - +1.0
2,809,226 - +0.4
2,809,232 + -0.1
2,809,285 + +1.0
2,809,285 + -0.7
2,809,285 + +0.8
2,809,286 - +1.0
2,809,501 + Psest_2627 0.18 -1.0
2,809,502 - Psest_2627 0.19 -0.1
2,809,780 + Psest_2627 0.40 +0.7
2,809,780 + Psest_2627 0.40 +0.1
2,809,896 + Psest_2627 0.48 +1.1
2,809,897 - Psest_2627 0.48 +0.3
2,809,897 - Psest_2627 0.48 +2.6
2,809,948 + Psest_2627 0.52 +0.9
2,810,035 + Psest_2627 0.59 +0.3
2,810,035 + Psest_2627 0.59 -0.3
2,810,036 - Psest_2627 0.59 +0.2
2,810,036 - Psest_2627 0.59 -0.0
2,810,036 - Psest_2627 0.59 +0.8
2,810,036 - Psest_2627 0.59 -1.5
2,810,036 - Psest_2627 0.59 +2.2
2,810,036 - Psest_2627 0.59 +0.0
2,810,062 + Psest_2627 0.61 -0.7
2,810,062 + Psest_2627 0.61 +0.6
2,810,062 + Psest_2627 0.61 -1.3
2,810,062 + Psest_2627 0.61 -0.2
2,810,062 + Psest_2627 0.61 -1.4
2,810,063 - Psest_2627 0.61 +0.2
2,810,063 - Psest_2627 0.61 +0.3
2,810,063 - Psest_2627 0.61 +0.5
2,810,063 - Psest_2627 0.61 -1.7
2,810,063 - Psest_2627 0.61 +1.0
2,810,140 + Psest_2627 0.67 -1.3
2,810,243 - Psest_2627 0.75 +0.0

Or see this region's nucleotide sequence