Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2624

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2623 and Psest_2624 are separated by 10 nucleotidesPsest_2624 and Psest_2625 are separated by 15 nucleotides Psest_2623: Psest_2623 - Flp pilus assembly protein TadG, at 2,805,236 to 2,806,570 _2623 Psest_2624: Psest_2624 - hypothetical protein, at 2,806,581 to 2,806,850 _2624 Psest_2625: Psest_2625 - Flp pilus assembly protein, secretin CpaC, at 2,806,866 to 2,808,380 _2625 Position (kb) 2806 2807Strain fitness (log2 ratio) -2 -1 0 1 2at 2805.597 kb on + strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.599 kb on + strand, within Psest_2623at 2805.747 kb on + strand, within Psest_2623at 2805.747 kb on + strand, within Psest_2623at 2805.748 kb on - strand, within Psest_2623at 2805.748 kb on - strand, within Psest_2623at 2806.008 kb on + strand, within Psest_2623at 2806.008 kb on + strand, within Psest_2623at 2806.009 kb on - strand, within Psest_2623at 2806.009 kb on - strand, within Psest_2623at 2806.016 kb on - strand, within Psest_2623at 2806.121 kb on - strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.156 kb on - strand, within Psest_2623at 2806.156 kb on - strand, within Psest_2623at 2806.160 kb on - strand, within Psest_2623at 2806.160 kb on - strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.179 kb on + strand, within Psest_2623at 2806.179 kb on + strand, within Psest_2623at 2806.180 kb on - strand, within Psest_2623at 2806.180 kb on - strand, within Psest_2623at 2806.180 kb on - strand, within Psest_2623at 2806.370 kb on + strand, within Psest_2623at 2806.447 kb on + strandat 2806.447 kb on + strandat 2806.447 kb on + strandat 2806.448 kb on - strandat 2806.511 kb on + strandat 2806.511 kb on + strandat 2806.511 kb on + strandat 2806.512 kb on - strandat 2806.512 kb on - strandat 2806.512 kb on - strandat 2806.512 kb on - strandat 2806.512 kb on - strandat 2806.744 kb on + strand, within Psest_2624at 2806.744 kb on + strand, within Psest_2624at 2806.756 kb on + strand, within Psest_2624at 2806.796 kb on - strand, within Psest_2624at 2806.796 kb on - strand, within Psest_2624at 2806.867 kb on + strandat 2806.867 kb on + strandat 2806.867 kb on + strandat 2806.868 kb on - strandat 2806.960 kb on + strandat 2806.960 kb on + strandat 2806.960 kb on + strandat 2806.961 kb on - strandat 2806.961 kb on - strandat 2806.961 kb on - strandat 2806.961 kb on - strandat 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.080 kb on + strand, within Psest_2625at 2807.081 kb on - strand, within Psest_2625at 2807.081 kb on - strand, within Psest_2625at 2807.081 kb on - strand, within Psest_2625at 2807.081 kb on - strand, within Psest_2625at 2807.147 kb on - strand, within Psest_2625at 2807.147 kb on - strand, within Psest_2625at 2807.147 kb on - strand, within Psest_2625at 2807.147 kb on - strand, within Psest_2625at 2807.402 kb on - strand, within Psest_2625at 2807.402 kb on - strand, within Psest_2625at 2807.649 kb on + strand, within Psest_2625at 2807.649 kb on + strand, within Psest_2625at 2807.650 kb on - strand, within Psest_2625at 2807.650 kb on - strand, within Psest_2625at 2807.650 kb on - strand, within Psest_2625

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,805,597 + Psest_2623 0.27 +0.3
2,805,598 - Psest_2623 0.27 +1.4
2,805,598 - Psest_2623 0.27 -0.4
2,805,598 - Psest_2623 0.27 -0.2
2,805,598 - Psest_2623 0.27 -1.7
2,805,599 + Psest_2623 0.27 +1.4
2,805,747 + Psest_2623 0.38 +0.4
2,805,747 + Psest_2623 0.38 -0.5
2,805,748 - Psest_2623 0.38 +0.4
2,805,748 - Psest_2623 0.38 -0.6
2,806,008 + Psest_2623 0.58 -0.8
2,806,008 + Psest_2623 0.58 +0.7
2,806,009 - Psest_2623 0.58 +0.1
2,806,009 - Psest_2623 0.58 -1.1
2,806,016 - Psest_2623 0.58 +0.6
2,806,121 - Psest_2623 0.66 +1.0
2,806,155 + Psest_2623 0.69 +0.6
2,806,155 + Psest_2623 0.69 -0.3
2,806,155 + Psest_2623 0.69 +1.0
2,806,155 + Psest_2623 0.69 -0.4
2,806,155 + Psest_2623 0.69 +0.6
2,806,156 - Psest_2623 0.69 -0.6
2,806,156 - Psest_2623 0.69 +0.3
2,806,160 - Psest_2623 0.69 +0.5
2,806,160 - Psest_2623 0.69 -0.0
2,806,175 + Psest_2623 0.70 +0.5
2,806,175 + Psest_2623 0.70 +0.3
2,806,175 + Psest_2623 0.70 +0.4
2,806,175 + Psest_2623 0.70 -0.3
2,806,175 + Psest_2623 0.70 -0.2
2,806,175 + Psest_2623 0.70 +0.1
2,806,175 + Psest_2623 0.70 +2.3
2,806,175 + Psest_2623 0.70 +0.1
2,806,176 - Psest_2623 0.70 -1.8
2,806,176 - Psest_2623 0.70 -0.0
2,806,176 - Psest_2623 0.70 -0.5
2,806,176 - Psest_2623 0.70 -0.7
2,806,176 - Psest_2623 0.70 +0.1
2,806,176 - Psest_2623 0.70 +0.6
2,806,176 - Psest_2623 0.70 -0.3
2,806,176 - Psest_2623 0.70 -1.8
2,806,179 + Psest_2623 0.71 +0.2
2,806,179 + Psest_2623 0.71 -0.2
2,806,180 - Psest_2623 0.71 +0.7
2,806,180 - Psest_2623 0.71 +0.3
2,806,180 - Psest_2623 0.71 -1.1
2,806,370 + Psest_2623 0.85 +0.1
2,806,447 + -0.0
2,806,447 + +1.3
2,806,447 + +0.1
2,806,448 - -0.5
2,806,511 + -1.0
2,806,511 + +0.6
2,806,511 + +0.4
2,806,512 - +0.7
2,806,512 - -0.4
2,806,512 - -0.1
2,806,512 - -0.1
2,806,512 - +0.3
2,806,744 + Psest_2624 0.60 +1.2
2,806,744 + Psest_2624 0.60 +0.0
2,806,756 + Psest_2624 0.65 -0.6
2,806,796 - Psest_2624 0.80 +2.2
2,806,796 - Psest_2624 0.80 +1.5
2,806,867 + -0.3
2,806,867 + -0.6
2,806,867 + +0.3
2,806,868 - +0.1
2,806,960 + +2.0
2,806,960 + -1.2
2,806,960 + +0.2
2,806,961 - +0.6
2,806,961 - -0.5
2,806,961 - -0.8
2,806,961 - +0.4
2,807,080 + Psest_2625 0.14 -1.5
2,807,080 + Psest_2625 0.14 +0.7
2,807,080 + Psest_2625 0.14 +0.4
2,807,080 + Psest_2625 0.14 +0.4
2,807,080 + Psest_2625 0.14 -1.3
2,807,080 + Psest_2625 0.14 +2.6
2,807,080 + Psest_2625 0.14 +1.0
2,807,080 + Psest_2625 0.14 -0.2
2,807,080 + Psest_2625 0.14 -1.7
2,807,080 + Psest_2625 0.14 -0.1
2,807,080 + Psest_2625 0.14 -0.0
2,807,081 - Psest_2625 0.14 -0.1
2,807,081 - Psest_2625 0.14 -0.2
2,807,081 - Psest_2625 0.14 +0.4
2,807,081 - Psest_2625 0.14 -0.3
2,807,147 - Psest_2625 0.19 -0.1
2,807,147 - Psest_2625 0.19 +0.6
2,807,147 - Psest_2625 0.19 +0.1
2,807,147 - Psest_2625 0.19 +1.0
2,807,402 - Psest_2625 0.35 -1.2
2,807,402 - Psest_2625 0.35 +1.2
2,807,649 + Psest_2625 0.52 +1.0
2,807,649 + Psest_2625 0.52 +0.1
2,807,650 - Psest_2625 0.52 -1.0
2,807,650 - Psest_2625 0.52 -1.3
2,807,650 - Psest_2625 0.52 +0.1

Or see this region's nucleotide sequence