Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2396

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2395 and Psest_2396 are separated by 2 nucleotidesPsest_2396 and Psest_2397 overlap by 4 nucleotides Psest_2395: Psest_2395 - Uncharacterized conserved protein, at 2,548,084 to 2,549,043 _2395 Psest_2396: Psest_2396 - Predicted transcriptional regulators, at 2,549,046 to 2,549,981 _2396 Psest_2397: Psest_2397 - Deoxyribodipyrimidine photolyase, at 2,549,978 to 2,551,408 _2397 Position (kb) 2549 2550Strain fitness (log2 ratio) -1 0 1 2at 2548.214 kb on + strand, within Psest_2395at 2548.390 kb on + strand, within Psest_2395at 2548.390 kb on + strand, within Psest_2395at 2548.458 kb on + strand, within Psest_2395at 2548.585 kb on + strand, within Psest_2395at 2548.586 kb on - strand, within Psest_2395at 2548.586 kb on - strand, within Psest_2395at 2548.660 kb on + strand, within Psest_2395at 2548.666 kb on + strand, within Psest_2395at 2548.667 kb on - strand, within Psest_2395at 2548.667 kb on - strand, within Psest_2395at 2548.667 kb on - strand, within Psest_2395at 2548.762 kb on + strand, within Psest_2395at 2548.978 kb on + strandat 2548.978 kb on + strandat 2548.978 kb on + strandat 2548.978 kb on + strandat 2548.978 kb on + strandat 2548.996 kb on + strandat 2548.997 kb on - strandat 2548.997 kb on - strandat 2549.206 kb on - strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.562 kb on + strand, within Psest_2396at 2549.563 kb on - strand, within Psest_2396at 2549.563 kb on - strand, within Psest_2396at 2549.563 kb on - strand, within Psest_2396at 2549.760 kb on + strand, within Psest_2396at 2549.761 kb on - strand, within Psest_2396at 2549.861 kb on + strand, within Psest_2396at 2549.861 kb on + strand, within Psest_2396at 2550.071 kb on + strandat 2550.071 kb on + strandat 2550.071 kb on + strandat 2550.272 kb on + strand, within Psest_2397at 2550.272 kb on + strand, within Psest_2397at 2550.272 kb on + strand, within Psest_2397at 2550.273 kb on - strand, within Psest_2397at 2550.273 kb on - strand, within Psest_2397at 2550.273 kb on - strand, within Psest_2397at 2550.273 kb on - strand, within Psest_2397at 2550.423 kb on + strand, within Psest_2397at 2550.650 kb on + strand, within Psest_2397at 2550.650 kb on + strand, within Psest_2397at 2550.651 kb on - strand, within Psest_2397at 2550.651 kb on - strand, within Psest_2397at 2550.704 kb on + strand, within Psest_2397at 2550.800 kb on - strand, within Psest_2397at 2550.800 kb on - strand, within Psest_2397at 2550.800 kb on - strand, within Psest_2397at 2550.833 kb on + strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.924 kb on - strand, within Psest_2397

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,548,214 + Psest_2395 0.14 +0.6
2,548,390 + Psest_2395 0.32 +0.6
2,548,390 + Psest_2395 0.32 +0.6
2,548,458 + Psest_2395 0.39 +1.0
2,548,585 + Psest_2395 0.52 +0.2
2,548,586 - Psest_2395 0.52 -0.7
2,548,586 - Psest_2395 0.52 -0.0
2,548,660 + Psest_2395 0.60 -0.7
2,548,666 + Psest_2395 0.61 -0.2
2,548,667 - Psest_2395 0.61 +0.9
2,548,667 - Psest_2395 0.61 +2.5
2,548,667 - Psest_2395 0.61 +0.3
2,548,762 + Psest_2395 0.71 +1.9
2,548,978 + +0.3
2,548,978 + +1.0
2,548,978 + +1.5
2,548,978 + -1.1
2,548,978 + +0.5
2,548,996 + +0.8
2,548,997 - +0.5
2,548,997 - +0.3
2,549,206 - Psest_2396 0.17 -0.3
2,549,562 + Psest_2396 0.55 +0.4
2,549,562 + Psest_2396 0.55 +1.2
2,549,562 + Psest_2396 0.55 +1.7
2,549,562 + Psest_2396 0.55 +0.7
2,549,562 + Psest_2396 0.55 +2.0
2,549,562 + Psest_2396 0.55 -0.2
2,549,563 - Psest_2396 0.55 +0.9
2,549,563 - Psest_2396 0.55 +0.4
2,549,563 - Psest_2396 0.55 +0.3
2,549,760 + Psest_2396 0.76 -0.3
2,549,761 - Psest_2396 0.76 +0.0
2,549,861 + Psest_2396 0.87 +0.3
2,549,861 + Psest_2396 0.87 +1.8
2,550,071 + -0.5
2,550,071 + +0.7
2,550,071 + +0.9
2,550,272 + Psest_2397 0.21 -0.5
2,550,272 + Psest_2397 0.21 -0.1
2,550,272 + Psest_2397 0.21 -0.4
2,550,273 - Psest_2397 0.21 +0.7
2,550,273 - Psest_2397 0.21 +0.9
2,550,273 - Psest_2397 0.21 +0.9
2,550,273 - Psest_2397 0.21 +0.3
2,550,423 + Psest_2397 0.31 -0.2
2,550,650 + Psest_2397 0.47 +1.1
2,550,650 + Psest_2397 0.47 +0.5
2,550,651 - Psest_2397 0.47 +1.1
2,550,651 - Psest_2397 0.47 -0.0
2,550,704 + Psest_2397 0.51 +0.4
2,550,800 - Psest_2397 0.57 -0.8
2,550,800 - Psest_2397 0.57 +0.3
2,550,800 - Psest_2397 0.57 +0.0
2,550,833 + Psest_2397 0.60 +0.5
2,550,834 - Psest_2397 0.60 +0.2
2,550,834 - Psest_2397 0.60 +1.4
2,550,834 - Psest_2397 0.60 +0.9
2,550,834 - Psest_2397 0.60 -0.3
2,550,924 - Psest_2397 0.66 -1.4

Or see this region's nucleotide sequence