Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2288

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2286 and Psest_2287 are separated by 97 nucleotidesPsest_2287 and Psest_2288 are separated by 89 nucleotidesPsest_2288 and Psest_2289 are separated by 177 nucleotides Psest_2286: Psest_2286 - endopeptidase Clp ATP-binding regulatory subunit (clpX), at 2,436,295 to 2,437,575 _2286 Psest_2287: Psest_2287 - ATP-dependent Clp protease, proteolytic subunit ClpP, at 2,437,673 to 2,438,311 _2287 Psest_2288: Psest_2288 - trigger factor, at 2,438,401 to 2,439,711 _2288 Psest_2289: Psest_2289 - Nitric oxide reductase activation protein, at 2,439,889 to 2,441,910 _2289 Position (kb) 2438 2439 2440Strain fitness (log2 ratio) -2 -1 0 1 2at 2438.372 kb on - strandat 2438.372 kb on - strandat 2438.488 kb on - strandat 2438.488 kb on - strandat 2438.492 kb on - strandat 2438.492 kb on - strandat 2438.492 kb on - strandat 2438.492 kb on - strandat 2438.492 kb on - strandat 2438.550 kb on - strand, within Psest_2288at 2438.550 kb on - strand, within Psest_2288at 2438.550 kb on - strand, within Psest_2288at 2438.550 kb on - strand, within Psest_2288at 2438.553 kb on - strand, within Psest_2288at 2438.583 kb on - strand, within Psest_2288at 2438.828 kb on - strand, within Psest_2288at 2439.399 kb on - strand, within Psest_2288at 2439.399 kb on - strand, within Psest_2288at 2439.486 kb on - strand, within Psest_2288at 2439.735 kb on + strandat 2439.735 kb on + strandat 2439.735 kb on + strandat 2439.735 kb on + strandat 2439.735 kb on + strandat 2439.735 kb on + strandat 2439.735 kb on + strandat 2439.735 kb on + strandat 2439.735 kb on + strandat 2439.735 kb on + strandat 2439.736 kb on - strandat 2439.736 kb on - strandat 2439.774 kb on - strandat 2439.790 kb on + strandat 2439.790 kb on + strandat 2439.790 kb on + strandat 2439.790 kb on + strandat 2439.790 kb on + strandat 2439.790 kb on + strandat 2439.790 kb on + strandat 2439.790 kb on + strandat 2439.791 kb on - strandat 2439.791 kb on - strandat 2439.791 kb on - strandat 2439.791 kb on - strandat 2439.791 kb on - strandat 2439.791 kb on - strandat 2439.791 kb on - strandat 2439.791 kb on - strandat 2439.890 kb on + strandat 2439.890 kb on + strandat 2439.963 kb on - strandat 2439.992 kb on + strandat 2440.033 kb on + strandat 2440.098 kb on - strand, within Psest_2289at 2440.098 kb on - strand, within Psest_2289at 2440.211 kb on + strand, within Psest_2289at 2440.211 kb on + strand, within Psest_2289at 2440.211 kb on + strand, within Psest_2289at 2440.211 kb on + strand, within Psest_2289at 2440.212 kb on - strand, within Psest_2289at 2440.212 kb on - strand, within Psest_2289at 2440.260 kb on - strand, within Psest_2289at 2440.396 kb on + strand, within Psest_2289at 2440.396 kb on + strand, within Psest_2289at 2440.396 kb on + strand, within Psest_2289at 2440.397 kb on - strand, within Psest_2289at 2440.397 kb on - strand, within Psest_2289at 2440.397 kb on - strand, within Psest_2289at 2440.397 kb on - strand, within Psest_2289at 2440.397 kb on - strand, within Psest_2289at 2440.397 kb on - strand, within Psest_2289at 2440.496 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.550 kb on + strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.551 kb on - strand, within Psest_2289at 2440.708 kb on + strand, within Psest_2289at 2440.709 kb on - strand, within Psest_2289

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,438,372 - +1.9
2,438,372 - -0.3
2,438,488 - +0.7
2,438,488 - +0.2
2,438,492 - +0.2
2,438,492 - -0.5
2,438,492 - +0.1
2,438,492 - +0.0
2,438,492 - -0.4
2,438,550 - Psest_2288 0.11 +0.6
2,438,550 - Psest_2288 0.11 -0.4
2,438,550 - Psest_2288 0.11 +0.3
2,438,550 - Psest_2288 0.11 +0.5
2,438,553 - Psest_2288 0.12 +0.7
2,438,583 - Psest_2288 0.14 +1.0
2,438,828 - Psest_2288 0.33 +0.0
2,439,399 - Psest_2288 0.76 +0.8
2,439,399 - Psest_2288 0.76 -0.9
2,439,486 - Psest_2288 0.83 +0.9
2,439,735 + +0.3
2,439,735 + +0.3
2,439,735 + -0.7
2,439,735 + +1.3
2,439,735 + +0.1
2,439,735 + +0.7
2,439,735 + +1.2
2,439,735 + -0.3
2,439,735 + -1.9
2,439,735 + +1.0
2,439,736 - -0.3
2,439,736 - -0.0
2,439,774 - +0.5
2,439,790 + +1.6
2,439,790 + +0.9
2,439,790 + -0.5
2,439,790 + +0.3
2,439,790 + +0.5
2,439,790 + +0.1
2,439,790 + +0.9
2,439,790 + +0.6
2,439,791 - -0.6
2,439,791 - +0.5
2,439,791 - -0.4
2,439,791 - +0.6
2,439,791 - +0.6
2,439,791 - +0.6
2,439,791 - +0.7
2,439,791 - -1.0
2,439,890 + +0.5
2,439,890 + +0.2
2,439,963 - -0.3
2,439,992 + -0.6
2,440,033 + -0.8
2,440,098 - Psest_2289 0.10 -1.1
2,440,098 - Psest_2289 0.10 +1.5
2,440,211 + Psest_2289 0.16 -0.9
2,440,211 + Psest_2289 0.16 +0.1
2,440,211 + Psest_2289 0.16 +0.1
2,440,211 + Psest_2289 0.16 +0.0
2,440,212 - Psest_2289 0.16 -0.2
2,440,212 - Psest_2289 0.16 -0.1
2,440,260 - Psest_2289 0.18 -0.7
2,440,396 + Psest_2289 0.25 +0.1
2,440,396 + Psest_2289 0.25 -0.3
2,440,396 + Psest_2289 0.25 -0.5
2,440,397 - Psest_2289 0.25 -0.2
2,440,397 - Psest_2289 0.25 -0.1
2,440,397 - Psest_2289 0.25 -0.4
2,440,397 - Psest_2289 0.25 -1.1
2,440,397 - Psest_2289 0.25 +0.0
2,440,397 - Psest_2289 0.25 +0.4
2,440,496 + Psest_2289 0.30 +0.1
2,440,550 + Psest_2289 0.33 +0.3
2,440,550 + Psest_2289 0.33 +0.3
2,440,550 + Psest_2289 0.33 -0.1
2,440,550 + Psest_2289 0.33 +0.3
2,440,550 + Psest_2289 0.33 -0.2
2,440,550 + Psest_2289 0.33 -0.2
2,440,550 + Psest_2289 0.33 +0.9
2,440,550 + Psest_2289 0.33 -0.3
2,440,550 + Psest_2289 0.33 +0.7
2,440,550 + Psest_2289 0.33 -0.1
2,440,550 + Psest_2289 0.33 -0.3
2,440,550 + Psest_2289 0.33 -0.1
2,440,551 - Psest_2289 0.33 -0.4
2,440,551 - Psest_2289 0.33 -0.1
2,440,551 - Psest_2289 0.33 -1.9
2,440,551 - Psest_2289 0.33 -0.6
2,440,551 - Psest_2289 0.33 -0.6
2,440,551 - Psest_2289 0.33 -0.2
2,440,551 - Psest_2289 0.33 +1.3
2,440,551 - Psest_2289 0.33 -0.9
2,440,551 - Psest_2289 0.33 -0.0
2,440,551 - Psest_2289 0.33 +0.4
2,440,551 - Psest_2289 0.33 +0.3
2,440,551 - Psest_2289 0.33 +0.1
2,440,551 - Psest_2289 0.33 +0.1
2,440,551 - Psest_2289 0.33 +0.4
2,440,551 - Psest_2289 0.33 +0.5
2,440,551 - Psest_2289 0.33 -0.5
2,440,551 - Psest_2289 0.33 +0.6
2,440,551 - Psest_2289 0.33 -0.3
2,440,551 - Psest_2289 0.33 +0.3
2,440,551 - Psest_2289 0.33 +0.2
2,440,551 - Psest_2289 0.33 +0.2
2,440,551 - Psest_2289 0.33 -0.5
2,440,551 - Psest_2289 0.33 -0.6
2,440,551 - Psest_2289 0.33 +0.0
2,440,551 - Psest_2289 0.33 -0.3
2,440,551 - Psest_2289 0.33 +0.2
2,440,551 - Psest_2289 0.33 -0.4
2,440,551 - Psest_2289 0.33 +0.6
2,440,551 - Psest_2289 0.33 +0.6
2,440,551 - Psest_2289 0.33 -0.2
2,440,708 + Psest_2289 0.41 -0.9
2,440,709 - Psest_2289 0.41 +1.1

Or see this region's nucleotide sequence