Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2120

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2119 and Psest_2120 are separated by 121 nucleotidesPsest_2120 and Psest_2121 are separated by 51 nucleotides Psest_2119: Psest_2119 - Glycine/D-amino acid oxidases (deaminating), at 2,250,175 to 2,251,419 _2119 Psest_2120: Psest_2120 - Transcriptional regulator, at 2,251,541 to 2,252,449 _2120 Psest_2121: Psest_2121 - Predicted ATPase, at 2,252,501 to 2,253,610 _2121 Position (kb) 2251 2252 2253Strain fitness (log2 ratio) -1 0 1 2at 2250.612 kb on - strand, within Psest_2119at 2250.854 kb on + strand, within Psest_2119at 2250.854 kb on + strand, within Psest_2119at 2250.854 kb on + strand, within Psest_2119at 2250.854 kb on + strand, within Psest_2119at 2250.854 kb on + strand, within Psest_2119at 2250.992 kb on + strand, within Psest_2119at 2250.992 kb on + strand, within Psest_2119at 2250.993 kb on - strand, within Psest_2119at 2251.268 kb on + strand, within Psest_2119at 2251.371 kb on - strandat 2251.452 kb on + strandat 2251.452 kb on + strandat 2251.453 kb on - strandat 2251.555 kb on + strandat 2251.618 kb on + strandat 2251.618 kb on + strandat 2251.618 kb on + strandat 2251.618 kb on + strandat 2251.619 kb on - strandat 2251.619 kb on - strandat 2251.619 kb on - strandat 2251.897 kb on + strand, within Psest_2120at 2251.898 kb on - strand, within Psest_2120at 2251.898 kb on - strand, within Psest_2120at 2252.201 kb on - strand, within Psest_2120at 2252.216 kb on + strand, within Psest_2120at 2252.217 kb on - strand, within Psest_2120at 2252.648 kb on + strandat 2252.648 kb on + strand, within Psest_2121at 2252.649 kb on - strand, within Psest_2121at 2252.649 kb on - strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,250,612 - Psest_2119 0.35 +0.1
2,250,854 + Psest_2119 0.55 +0.1
2,250,854 + Psest_2119 0.55 -0.7
2,250,854 + Psest_2119 0.55 -0.2
2,250,854 + Psest_2119 0.55 -0.3
2,250,854 + Psest_2119 0.55 +0.4
2,250,992 + Psest_2119 0.66 +0.2
2,250,992 + Psest_2119 0.66 -0.7
2,250,993 - Psest_2119 0.66 +0.6
2,251,268 + Psest_2119 0.88 -0.7
2,251,371 - +0.6
2,251,452 + +1.3
2,251,452 + +1.7
2,251,453 - +0.9
2,251,555 + +0.1
2,251,618 + +1.3
2,251,618 + +0.7
2,251,618 + -0.2
2,251,618 + -0.1
2,251,619 - +0.8
2,251,619 - -0.1
2,251,619 - +0.2
2,251,897 + Psest_2120 0.39 +0.4
2,251,898 - Psest_2120 0.39 +0.4
2,251,898 - Psest_2120 0.39 +1.1
2,252,201 - Psest_2120 0.73 -0.1
2,252,216 + Psest_2120 0.74 +0.9
2,252,217 - Psest_2120 0.74 +0.9
2,252,648 + +0.9
2,252,648 + Psest_2121 0.13 +0.5
2,252,649 - Psest_2121 0.13 +1.9
2,252,649 - Psest_2121 0.13 -1.0
2,252,820 + Psest_2121 0.29 +1.1
2,252,820 + Psest_2121 0.29 -0.7
2,252,820 + Psest_2121 0.29 +0.1
2,252,820 + Psest_2121 0.29 -1.1
2,252,820 + Psest_2121 0.29 +1.1
2,252,820 + Psest_2121 0.29 +1.5

Or see this region's nucleotide sequence