Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1939 and Psest_1940 overlap by 4 nucleotides Psest_1940 and Psest_1941 overlap by 8 nucleotides Psest_1941 and Psest_1942 overlap by 4 nucleotides
Psest_1939: Psest_1939 - Tetratricopeptide repeat., at 2,051,945 to 2,053,666
_1939
Psest_1940: Psest_1940 - Uncharacterized protein containing a von Willebrand factor type A (vWA) domain, at 2,053,663 to 2,054,682
_1940
Psest_1941: Psest_1941 - hypothetical protein, at 2,054,675 to 2,055,169
_1941
Psest_1942: Psest_1942 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 2,055,166 to 2,056,128
_1942
Position (kb)
2053
2054
2055 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2053.251 kb on + strand, within Psest_1939 at 2053.252 kb on - strand, within Psest_1939 at 2053.252 kb on - strand, within Psest_1939 at 2053.253 kb on + strand, within Psest_1939 at 2053.253 kb on + strand, within Psest_1939 at 2053.253 kb on + strand, within Psest_1939 at 2053.253 kb on + strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.380 kb on - strand, within Psest_1939 at 2053.773 kb on - strand, within Psest_1940 at 2053.881 kb on - strand, within Psest_1940 at 2054.246 kb on + strand, within Psest_1940 at 2054.247 kb on - strand, within Psest_1940 at 2054.247 kb on - strand, within Psest_1940 at 2054.389 kb on + strand, within Psest_1940 at 2054.389 kb on + strand, within Psest_1940 at 2054.390 kb on - strand, within Psest_1940 at 2054.390 kb on - strand, within Psest_1940 at 2054.435 kb on - strand, within Psest_1940 at 2054.757 kb on + strand, within Psest_1941
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,053,251 + Psest_1939 0.76 +0.5 2,053,252 - Psest_1939 0.76 +1.2 2,053,252 - Psest_1939 0.76 -0.3 2,053,253 + Psest_1939 0.76 -0.2 2,053,253 + Psest_1939 0.76 +0.2 2,053,253 + Psest_1939 0.76 +0.1 2,053,253 + Psest_1939 0.76 +0.7 2,053,254 - Psest_1939 0.76 +1.1 2,053,254 - Psest_1939 0.76 -0.2 2,053,254 - Psest_1939 0.76 +2.0 2,053,254 - Psest_1939 0.76 -0.3 2,053,254 - Psest_1939 0.76 +1.0 2,053,254 - Psest_1939 0.76 +1.0 2,053,254 - Psest_1939 0.76 +0.5 2,053,254 - Psest_1939 0.76 +0.8 2,053,254 - Psest_1939 0.76 +1.0 2,053,254 - Psest_1939 0.76 +2.8 2,053,380 - Psest_1939 0.83 +0.0 2,053,773 - Psest_1940 0.11 +2.0 2,053,881 - Psest_1940 0.21 -0.3 2,054,246 + Psest_1940 0.57 +0.3 2,054,247 - Psest_1940 0.57 +1.7 2,054,247 - Psest_1940 0.57 +1.0 2,054,389 + Psest_1940 0.71 +2.1 2,054,389 + Psest_1940 0.71 +0.8 2,054,390 - Psest_1940 0.71 +1.0 2,054,390 - Psest_1940 0.71 -0.5 2,054,435 - Psest_1940 0.76 -0.6 2,054,757 + Psest_1941 0.17 +0.2
Or see this region's nucleotide sequence