Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1940

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1939 and Psest_1940 overlap by 4 nucleotidesPsest_1940 and Psest_1941 overlap by 8 nucleotidesPsest_1941 and Psest_1942 overlap by 4 nucleotides Psest_1939: Psest_1939 - Tetratricopeptide repeat., at 2,051,945 to 2,053,666 _1939 Psest_1940: Psest_1940 - Uncharacterized protein containing a von Willebrand factor type A (vWA) domain, at 2,053,663 to 2,054,682 _1940 Psest_1941: Psest_1941 - hypothetical protein, at 2,054,675 to 2,055,169 _1941 Psest_1942: Psest_1942 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 2,055,166 to 2,056,128 _1942 Position (kb) 2053 2054 2055Strain fitness (log2 ratio) -1 0 1 2 3at 2053.251 kb on + strand, within Psest_1939at 2053.252 kb on - strand, within Psest_1939at 2053.252 kb on - strand, within Psest_1939at 2053.253 kb on + strand, within Psest_1939at 2053.253 kb on + strand, within Psest_1939at 2053.253 kb on + strand, within Psest_1939at 2053.253 kb on + strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.254 kb on - strand, within Psest_1939at 2053.380 kb on - strand, within Psest_1939at 2053.773 kb on - strand, within Psest_1940at 2053.881 kb on - strand, within Psest_1940at 2054.246 kb on + strand, within Psest_1940at 2054.247 kb on - strand, within Psest_1940at 2054.247 kb on - strand, within Psest_1940at 2054.389 kb on + strand, within Psest_1940at 2054.389 kb on + strand, within Psest_1940at 2054.390 kb on - strand, within Psest_1940at 2054.390 kb on - strand, within Psest_1940at 2054.435 kb on - strand, within Psest_1940at 2054.757 kb on + strand, within Psest_1941

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,053,251 + Psest_1939 0.76 +0.5
2,053,252 - Psest_1939 0.76 +1.2
2,053,252 - Psest_1939 0.76 -0.3
2,053,253 + Psest_1939 0.76 -0.2
2,053,253 + Psest_1939 0.76 +0.2
2,053,253 + Psest_1939 0.76 +0.1
2,053,253 + Psest_1939 0.76 +0.7
2,053,254 - Psest_1939 0.76 +1.1
2,053,254 - Psest_1939 0.76 -0.2
2,053,254 - Psest_1939 0.76 +2.0
2,053,254 - Psest_1939 0.76 -0.3
2,053,254 - Psest_1939 0.76 +1.0
2,053,254 - Psest_1939 0.76 +1.0
2,053,254 - Psest_1939 0.76 +0.5
2,053,254 - Psest_1939 0.76 +0.8
2,053,254 - Psest_1939 0.76 +1.0
2,053,254 - Psest_1939 0.76 +2.8
2,053,380 - Psest_1939 0.83 +0.0
2,053,773 - Psest_1940 0.11 +2.0
2,053,881 - Psest_1940 0.21 -0.3
2,054,246 + Psest_1940 0.57 +0.3
2,054,247 - Psest_1940 0.57 +1.7
2,054,247 - Psest_1940 0.57 +1.0
2,054,389 + Psest_1940 0.71 +2.1
2,054,389 + Psest_1940 0.71 +0.8
2,054,390 - Psest_1940 0.71 +1.0
2,054,390 - Psest_1940 0.71 -0.5
2,054,435 - Psest_1940 0.76 -0.6
2,054,757 + Psest_1941 0.17 +0.2

Or see this region's nucleotide sequence