Experiment: m.b. Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1840 and HP15_1841 are separated by 5 nucleotides HP15_1841 and HP15_1842 overlap by 8 nucleotides HP15_1842 and HP15_1843 are separated by 13 nucleotides HP15_1843 and HP15_1844 are separated by 193 nucleotides
HP15_1840: HP15_1840 - patatin, at 1,939,587 to 1,940,801
_1840
HP15_1841: HP15_1841 - conserved hypothetical protein, secreted, at 1,940,807 to 1,941,721
_1841
HP15_1842: HP15_1842 - hydrolase, alpha/beta fold family, at 1,941,714 to 1,942,664
_1842
HP15_1843: HP15_1843 - type IV pilus assembly PilZ, at 1,942,678 to 1,942,950
_1843
HP15_1844: HP15_1844 - DNA polymerase III, delta prime subunit, at 1,943,144 to 1,944,175
_1844
Position (kb)
1941
1942
1943 Strain fitness (log2 ratio)
-2
-1
0
1 at 1940.786 kb on + strand at 1940.916 kb on + strand, within HP15_1841 at 1941.041 kb on + strand, within HP15_1841 at 1941.099 kb on - strand, within HP15_1841 at 1941.265 kb on + strand, within HP15_1841 at 1941.273 kb on - strand, within HP15_1841 at 1941.500 kb on + strand, within HP15_1841 at 1941.551 kb on - strand, within HP15_1841 at 1941.551 kb on - strand, within HP15_1841 at 1941.572 kb on - strand, within HP15_1841 at 1941.618 kb on + strand, within HP15_1841 at 1941.618 kb on + strand, within HP15_1841 at 1941.643 kb on - strand at 1941.653 kb on - strand at 1941.671 kb on + strand at 1941.695 kb on - strand at 1941.799 kb on + strand at 1941.813 kb on - strand, within HP15_1842 at 1941.982 kb on + strand, within HP15_1842 at 1941.982 kb on + strand, within HP15_1842 at 1942.024 kb on - strand, within HP15_1842 at 1942.171 kb on + strand, within HP15_1842 at 1942.198 kb on - strand, within HP15_1842 at 1942.267 kb on - strand, within HP15_1842 at 1942.414 kb on + strand, within HP15_1842 at 1942.423 kb on + strand, within HP15_1842 at 1942.431 kb on - strand, within HP15_1842 at 1942.468 kb on - strand, within HP15_1842 at 1942.474 kb on - strand, within HP15_1842 at 1942.609 kb on - strand at 1942.670 kb on - strand at 1942.727 kb on + strand, within HP15_1843 at 1942.929 kb on - strand at 1942.963 kb on + strand at 1942.995 kb on + strand at 1943.001 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml remove 1,940,786 + +0.8 1,940,916 + HP15_1841 0.12 -1.6 1,941,041 + HP15_1841 0.26 -0.5 1,941,099 - HP15_1841 0.32 -1.5 1,941,265 + HP15_1841 0.50 -0.7 1,941,273 - HP15_1841 0.51 -0.4 1,941,500 + HP15_1841 0.76 -0.5 1,941,551 - HP15_1841 0.81 -2.0 1,941,551 - HP15_1841 0.81 -1.1 1,941,572 - HP15_1841 0.84 +0.3 1,941,618 + HP15_1841 0.89 +0.2 1,941,618 + HP15_1841 0.89 -0.6 1,941,643 - +0.9 1,941,653 - -0.2 1,941,671 + +0.4 1,941,695 - +0.6 1,941,799 + +0.4 1,941,813 - HP15_1842 0.10 -0.0 1,941,982 + HP15_1842 0.28 +0.3 1,941,982 + HP15_1842 0.28 -0.6 1,942,024 - HP15_1842 0.33 +0.4 1,942,171 + HP15_1842 0.48 -1.4 1,942,198 - HP15_1842 0.51 -0.6 1,942,267 - HP15_1842 0.58 -0.7 1,942,414 + HP15_1842 0.74 -0.2 1,942,423 + HP15_1842 0.75 +0.8 1,942,431 - HP15_1842 0.75 +0.4 1,942,468 - HP15_1842 0.79 -0.1 1,942,474 - HP15_1842 0.80 +1.3 1,942,609 - +0.3 1,942,670 - +1.1 1,942,727 + HP15_1843 0.18 -1.4 1,942,929 - -0.9 1,942,963 + +0.0 1,942,995 + -0.5 1,943,001 - -0.2
Or see this region's nucleotide sequence