Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1792

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1791 and Psest_1792 are separated by 4 nucleotidesPsest_1792 and Psest_1793 are separated by 134 nucleotides Psest_1791: Psest_1791 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,885,995 to 1,887,215 _1791 Psest_1792: Psest_1792 - RND family efflux transporter, MFP subunit, at 1,887,220 to 1,888,440 _1792 Psest_1793: Psest_1793 - Predicted divalent heavy-metal cations transporter, at 1,888,575 to 1,889,507 _1793 Position (kb) 1887 1888 1889Strain fitness (log2 ratio) -1 0 1at 1886.404 kb on - strand, within Psest_1791at 1886.566 kb on + strand, within Psest_1791at 1886.567 kb on - strand, within Psest_1791at 1886.567 kb on - strand, within Psest_1791at 1886.567 kb on - strand, within Psest_1791at 1886.572 kb on + strand, within Psest_1791at 1886.573 kb on - strand, within Psest_1791at 1886.573 kb on - strand, within Psest_1791at 1887.397 kb on + strand, within Psest_1792at 1887.398 kb on - strand, within Psest_1792at 1887.400 kb on + strand, within Psest_1792at 1887.400 kb on + strand, within Psest_1792at 1887.400 kb on + strand, within Psest_1792at 1887.401 kb on - strand, within Psest_1792at 1887.401 kb on - strand, within Psest_1792at 1887.742 kb on + strand, within Psest_1792at 1887.742 kb on + strand, within Psest_1792at 1887.743 kb on - strand, within Psest_1792at 1887.787 kb on + strand, within Psest_1792at 1887.850 kb on + strand, within Psest_1792at 1888.542 kb on - strandat 1888.707 kb on - strand, within Psest_1793at 1889.011 kb on - strand, within Psest_1793

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,886,404 - Psest_1791 0.33 -0.1
1,886,566 + Psest_1791 0.47 +0.5
1,886,567 - Psest_1791 0.47 -0.6
1,886,567 - Psest_1791 0.47 +0.9
1,886,567 - Psest_1791 0.47 -0.2
1,886,572 + Psest_1791 0.47 -0.9
1,886,573 - Psest_1791 0.47 -1.0
1,886,573 - Psest_1791 0.47 -0.1
1,887,397 + Psest_1792 0.14 +0.6
1,887,398 - Psest_1792 0.15 +1.3
1,887,400 + Psest_1792 0.15 +0.4
1,887,400 + Psest_1792 0.15 +1.1
1,887,400 + Psest_1792 0.15 +0.3
1,887,401 - Psest_1792 0.15 +0.5
1,887,401 - Psest_1792 0.15 +0.3
1,887,742 + Psest_1792 0.43 +0.6
1,887,742 + Psest_1792 0.43 +0.8
1,887,743 - Psest_1792 0.43 -0.1
1,887,787 + Psest_1792 0.46 +1.4
1,887,850 + Psest_1792 0.52 -0.2
1,888,542 - -1.1
1,888,707 - Psest_1793 0.14 +0.5
1,889,011 - Psest_1793 0.47 -0.1

Or see this region's nucleotide sequence