Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1725

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1722 and Psest_1723 are separated by 3 nucleotidesPsest_1723 and Psest_1724 are separated by 230 nucleotidesPsest_1724 and Psest_1725 are separated by 1 nucleotidesPsest_1725 and Psest_1726 are separated by 28 nucleotidesPsest_1726 and Psest_1727 are separated by 166 nucleotides Psest_1722: Psest_1722 - flagellar protein export ATPase FliI, at 1,828,632 to 1,829,990 _1722 Psest_1723: Psest_1723 - flagellar export protein FliJ, at 1,829,994 to 1,830,446 _1723 Psest_1724: Psest_1724 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 1,830,677 to 1,830,982 _1724 Psest_1725: Psest_1725 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,830,984 to 1,832,675 _1725 Psest_1726: Psest_1726 - Chemotaxis protein histidine kinase and related kinases, at 1,832,704 to 1,833,054 _1726 Psest_1727: Psest_1727 - Flagellar hook-length control protein, at 1,833,221 to 1,834,462 _1727 Position (kb) 1830 1831 1832 1833Strain fitness (log2 ratio) -2 -1 0 1 2at 1830.132 kb on + strand, within Psest_1723at 1830.133 kb on - strand, within Psest_1723at 1830.133 kb on - strand, within Psest_1723at 1830.133 kb on - strand, within Psest_1723at 1830.133 kb on - strand, within Psest_1723at 1830.170 kb on + strand, within Psest_1723at 1830.205 kb on - strand, within Psest_1723at 1830.205 kb on - strand, within Psest_1723at 1830.205 kb on - strand, within Psest_1723at 1830.205 kb on - strand, within Psest_1723at 1830.205 kb on - strand, within Psest_1723at 1830.205 kb on - strand, within Psest_1723at 1830.352 kb on - strand, within Psest_1723at 1830.442 kb on + strandat 1830.442 kb on + strandat 1830.443 kb on - strandat 1830.443 kb on - strandat 1830.443 kb on - strandat 1830.443 kb on - strandat 1830.500 kb on + strandat 1830.500 kb on + strandat 1830.500 kb on + strandat 1830.500 kb on + strandat 1830.500 kb on + strandat 1830.500 kb on + strandat 1830.512 kb on + strandat 1830.513 kb on - strandat 1830.777 kb on - strand, within Psest_1724at 1830.806 kb on + strand, within Psest_1724at 1830.833 kb on + strand, within Psest_1724at 1830.833 kb on + strand, within Psest_1724at 1830.834 kb on - strand, within Psest_1724at 1830.834 kb on - strand, within Psest_1724at 1830.834 kb on - strand, within Psest_1724at 1831.079 kb on + strandat 1831.080 kb on - strandat 1831.308 kb on + strand, within Psest_1725at 1831.309 kb on - strand, within Psest_1725at 1831.309 kb on - strand, within Psest_1725at 1831.666 kb on - strand, within Psest_1725at 1831.810 kb on - strand, within Psest_1725at 1831.810 kb on - strand, within Psest_1725at 1831.816 kb on + strand, within Psest_1725at 1831.817 kb on - strand, within Psest_1725at 1831.817 kb on - strand, within Psest_1725at 1831.817 kb on - strand, within Psest_1725at 1831.936 kb on + strand, within Psest_1725at 1831.936 kb on + strand, within Psest_1725at 1831.936 kb on + strand, within Psest_1725at 1831.937 kb on - strand, within Psest_1725at 1831.937 kb on - strand, within Psest_1725at 1831.937 kb on - strand, within Psest_1725at 1831.937 kb on - strand, within Psest_1725at 1832.100 kb on - strand, within Psest_1725at 1832.301 kb on + strand, within Psest_1725at 1832.301 kb on + strand, within Psest_1725at 1832.301 kb on + strand, within Psest_1725at 1832.322 kb on + strand, within Psest_1725at 1832.323 kb on - strand, within Psest_1725at 1832.323 kb on - strand, within Psest_1725at 1832.323 kb on - strand, within Psest_1725at 1832.323 kb on - strand, within Psest_1725at 1832.397 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.442 kb on + strand, within Psest_1725at 1832.442 kb on + strand, within Psest_1725at 1832.442 kb on + strand, within Psest_1725at 1832.442 kb on + strand, within Psest_1725at 1832.443 kb on - strand, within Psest_1725at 1832.673 kb on + strandat 1832.673 kb on + strandat 1833.079 kb on - strandat 1833.126 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,830,132 + Psest_1723 0.30 +0.4
1,830,133 - Psest_1723 0.31 +0.8
1,830,133 - Psest_1723 0.31 +0.7
1,830,133 - Psest_1723 0.31 +0.3
1,830,133 - Psest_1723 0.31 +0.9
1,830,170 + Psest_1723 0.39 -0.1
1,830,205 - Psest_1723 0.47 +0.2
1,830,205 - Psest_1723 0.47 +0.1
1,830,205 - Psest_1723 0.47 -0.5
1,830,205 - Psest_1723 0.47 +0.4
1,830,205 - Psest_1723 0.47 +0.5
1,830,205 - Psest_1723 0.47 +0.3
1,830,352 - Psest_1723 0.79 -0.1
1,830,442 + +1.0
1,830,442 + -0.0
1,830,443 - -0.3
1,830,443 - +0.1
1,830,443 - -0.0
1,830,443 - -0.5
1,830,500 + -0.1
1,830,500 + -0.4
1,830,500 + +1.0
1,830,500 + +0.0
1,830,500 + +0.5
1,830,500 + -1.9
1,830,512 + +0.0
1,830,513 - +0.5
1,830,777 - Psest_1724 0.33 -0.3
1,830,806 + Psest_1724 0.42 -0.8
1,830,833 + Psest_1724 0.51 -1.1
1,830,833 + Psest_1724 0.51 -0.0
1,830,834 - Psest_1724 0.51 -0.6
1,830,834 - Psest_1724 0.51 -0.6
1,830,834 - Psest_1724 0.51 -0.5
1,831,079 + -0.3
1,831,080 - -0.4
1,831,308 + Psest_1725 0.19 +0.8
1,831,309 - Psest_1725 0.19 +0.5
1,831,309 - Psest_1725 0.19 +0.8
1,831,666 - Psest_1725 0.40 +1.5
1,831,810 - Psest_1725 0.49 +0.9
1,831,810 - Psest_1725 0.49 +1.3
1,831,816 + Psest_1725 0.49 +1.4
1,831,817 - Psest_1725 0.49 +0.1
1,831,817 - Psest_1725 0.49 +0.2
1,831,817 - Psest_1725 0.49 +0.3
1,831,936 + Psest_1725 0.56 +0.3
1,831,936 + Psest_1725 0.56 -0.2
1,831,936 + Psest_1725 0.56 -1.4
1,831,937 - Psest_1725 0.56 -0.0
1,831,937 - Psest_1725 0.56 +0.6
1,831,937 - Psest_1725 0.56 -0.4
1,831,937 - Psest_1725 0.56 -0.2
1,832,100 - Psest_1725 0.66 +1.4
1,832,301 + Psest_1725 0.78 +2.0
1,832,301 + Psest_1725 0.78 +1.4
1,832,301 + Psest_1725 0.78 +1.6
1,832,322 + Psest_1725 0.79 +1.0
1,832,323 - Psest_1725 0.79 +1.4
1,832,323 - Psest_1725 0.79 +1.4
1,832,323 - Psest_1725 0.79 +1.4
1,832,323 - Psest_1725 0.79 +1.3
1,832,397 + Psest_1725 0.84 +1.2
1,832,400 + Psest_1725 0.84 +1.2
1,832,400 + Psest_1725 0.84 +1.9
1,832,400 + Psest_1725 0.84 +1.2
1,832,400 + Psest_1725 0.84 +1.5
1,832,400 + Psest_1725 0.84 +1.3
1,832,401 - Psest_1725 0.84 +1.4
1,832,401 - Psest_1725 0.84 +1.5
1,832,401 - Psest_1725 0.84 +1.2
1,832,401 - Psest_1725 0.84 +1.3
1,832,401 - Psest_1725 0.84 +1.2
1,832,401 - Psest_1725 0.84 +1.1
1,832,442 + Psest_1725 0.86 +1.5
1,832,442 + Psest_1725 0.86 +1.2
1,832,442 + Psest_1725 0.86 +1.4
1,832,442 + Psest_1725 0.86 +1.8
1,832,443 - Psest_1725 0.86 +1.5
1,832,673 + -0.1
1,832,673 + -0.5
1,833,079 - -0.8
1,833,126 + -0.9

Or see this region's nucleotide sequence