Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1663

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1661 and Psest_1662 overlap by 4 nucleotidesPsest_1662 and Psest_1663 are separated by 146 nucleotidesPsest_1663 and Psest_1664 are separated by 146 nucleotidesPsest_1664 and Psest_1665 overlap by 4 nucleotides Psest_1661: Psest_1661 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 1,770,731 to 1,771,783 _1661 Psest_1662: Psest_1662 - Uncharacterized protein conserved in bacteria, at 1,771,780 to 1,772,007 _1662 Psest_1663: Psest_1663 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 1,772,154 to 1,773,548 _1663 Psest_1664: Psest_1664 - Glycerophosphoryl diester phosphodiesterase, at 1,773,695 to 1,774,417 _1664 Psest_1665: Psest_1665 - hypothetical protein, at 1,774,414 to 1,774,722 _1665 Position (kb) 1772 1773 1774Strain fitness (log2 ratio) -2 -1 0 1 2at 1771.647 kb on + strand, within Psest_1661at 1772.127 kb on + strandat 1772.151 kb on + strandat 1772.151 kb on + strandat 1772.151 kb on + strandat 1772.151 kb on + strandat 1772.151 kb on + strandat 1772.152 kb on - strandat 1772.164 kb on - strandat 1772.164 kb on - strandat 1772.637 kb on - strand, within Psest_1663at 1772.641 kb on - strand, within Psest_1663at 1772.824 kb on - strand, within Psest_1663at 1773.045 kb on + strand, within Psest_1663at 1773.069 kb on + strand, within Psest_1663at 1773.117 kb on + strand, within Psest_1663at 1773.198 kb on + strand, within Psest_1663at 1773.198 kb on + strand, within Psest_1663at 1773.198 kb on + strand, within Psest_1663at 1773.199 kb on - strand, within Psest_1663at 1773.462 kb on + strandat 1773.637 kb on + strandat 1773.637 kb on + strandat 1773.878 kb on + strand, within Psest_1664at 1773.879 kb on - strand, within Psest_1664at 1773.879 kb on - strand, within Psest_1664at 1773.927 kb on + strand, within Psest_1664at 1773.928 kb on - strand, within Psest_1664at 1773.928 kb on - strand, within Psest_1664at 1773.928 kb on - strand, within Psest_1664at 1773.928 kb on - strand, within Psest_1664at 1773.950 kb on + strand, within Psest_1664at 1773.950 kb on + strand, within Psest_1664at 1773.951 kb on - strand, within Psest_1664at 1774.133 kb on + strand, within Psest_1664at 1774.134 kb on - strand, within Psest_1664at 1774.197 kb on + strand, within Psest_1664at 1774.198 kb on - strand, within Psest_1664at 1774.198 kb on - strand, within Psest_1664at 1774.198 kb on - strand, within Psest_1664at 1774.328 kb on + strand, within Psest_1664at 1774.329 kb on - strand, within Psest_1664at 1774.329 kb on - strand, within Psest_1664at 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.405 kb on - strandat 1774.405 kb on - strandat 1774.405 kb on - strandat 1774.405 kb on - strandat 1774.405 kb on - strandat 1774.423 kb on + strandat 1774.424 kb on - strandat 1774.449 kb on + strand, within Psest_1665at 1774.449 kb on + strand, within Psest_1665at 1774.449 kb on + strand, within Psest_1665at 1774.450 kb on - strand, within Psest_1665at 1774.450 kb on - strand, within Psest_1665at 1774.496 kb on + strand, within Psest_1665at 1774.496 kb on + strand, within Psest_1665at 1774.496 kb on + strand, within Psest_1665

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,771,647 + Psest_1661 0.87 -0.0
1,772,127 + -0.3
1,772,151 + +1.7
1,772,151 + +1.5
1,772,151 + -0.4
1,772,151 + +1.5
1,772,151 + -0.6
1,772,152 - +1.0
1,772,164 - +0.5
1,772,164 - +0.6
1,772,637 - Psest_1663 0.35 +2.5
1,772,641 - Psest_1663 0.35 +1.5
1,772,824 - Psest_1663 0.48 +0.4
1,773,045 + Psest_1663 0.64 +1.7
1,773,069 + Psest_1663 0.66 +0.5
1,773,117 + Psest_1663 0.69 +2.2
1,773,198 + Psest_1663 0.75 -0.6
1,773,198 + Psest_1663 0.75 +0.1
1,773,198 + Psest_1663 0.75 +0.3
1,773,199 - Psest_1663 0.75 +0.2
1,773,462 + -0.0
1,773,637 + +0.8
1,773,637 + +0.3
1,773,878 + Psest_1664 0.25 -0.3
1,773,879 - Psest_1664 0.25 +1.1
1,773,879 - Psest_1664 0.25 -1.1
1,773,927 + Psest_1664 0.32 -0.8
1,773,928 - Psest_1664 0.32 +1.0
1,773,928 - Psest_1664 0.32 -2.1
1,773,928 - Psest_1664 0.32 -0.4
1,773,928 - Psest_1664 0.32 -0.8
1,773,950 + Psest_1664 0.35 +0.8
1,773,950 + Psest_1664 0.35 -0.9
1,773,951 - Psest_1664 0.35 -0.3
1,774,133 + Psest_1664 0.61 -0.7
1,774,134 - Psest_1664 0.61 +1.4
1,774,197 + Psest_1664 0.69 -1.0
1,774,198 - Psest_1664 0.70 +0.1
1,774,198 - Psest_1664 0.70 +0.1
1,774,198 - Psest_1664 0.70 -0.3
1,774,328 + Psest_1664 0.88 +0.1
1,774,329 - Psest_1664 0.88 -0.5
1,774,329 - Psest_1664 0.88 +0.4
1,774,404 + -0.4
1,774,404 + -0.7
1,774,404 + +1.0
1,774,404 + +0.0
1,774,404 + -1.5
1,774,404 + -0.6
1,774,404 + -0.5
1,774,404 + -0.4
1,774,405 - +1.5
1,774,405 - +0.1
1,774,405 - -0.8
1,774,405 - -0.5
1,774,405 - +0.6
1,774,423 + +0.2
1,774,424 - -0.4
1,774,449 + Psest_1665 0.11 +0.7
1,774,449 + Psest_1665 0.11 -0.0
1,774,449 + Psest_1665 0.11 +0.4
1,774,450 - Psest_1665 0.12 -0.2
1,774,450 - Psest_1665 0.12 -0.4
1,774,496 + Psest_1665 0.27 -0.6
1,774,496 + Psest_1665 0.27 -0.7
1,774,496 + Psest_1665 0.27 -0.8

Or see this region's nucleotide sequence