Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1634

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1632 and Psest_1633 are separated by 179 nucleotidesPsest_1633 and Psest_1634 are separated by 103 nucleotidesPsest_1634 and Psest_1635 are separated by 68 nucleotides Psest_1632: Psest_1632 - Predicted permeases, at 1,732,605 to 1,733,360 _1632 Psest_1633: Psest_1633 - Protein of unknown function (DUF3365)., at 1,733,540 to 1,734,097 _1633 Psest_1634: Psest_1634 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain, at 1,734,201 to 1,736,183 _1634 Psest_1635: Psest_1635 - Signal transduction histidine kinase, at 1,736,252 to 1,739,005 _1635 Position (kb) 1734 1735 1736 1737Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1733.352 kb on + strandat 1733.352 kb on + strandat 1733.352 kb on + strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.353 kb on - strandat 1733.461 kb on + strandat 1733.461 kb on + strandat 1733.461 kb on + strandat 1733.462 kb on - strandat 1733.462 kb on - strandat 1733.462 kb on - strandat 1733.511 kb on + strandat 1733.639 kb on + strand, within Psest_1633at 1733.639 kb on + strand, within Psest_1633at 1733.639 kb on + strand, within Psest_1633at 1733.639 kb on + strand, within Psest_1633at 1733.640 kb on - strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.642 kb on + strand, within Psest_1633at 1733.643 kb on - strand, within Psest_1633at 1733.643 kb on - strand, within Psest_1633at 1733.643 kb on - strand, within Psest_1633at 1733.709 kb on + strand, within Psest_1633at 1733.710 kb on - strand, within Psest_1633at 1734.056 kb on + strandat 1734.109 kb on + strandat 1734.110 kb on - strandat 1734.206 kb on + strandat 1734.365 kb on - strandat 1734.431 kb on - strand, within Psest_1634at 1734.431 kb on - strand, within Psest_1634at 1734.481 kb on + strand, within Psest_1634at 1734.560 kb on - strand, within Psest_1634at 1734.691 kb on + strand, within Psest_1634at 1734.691 kb on + strand, within Psest_1634at 1735.195 kb on + strand, within Psest_1634at 1735.255 kb on + strand, within Psest_1634at 1735.255 kb on + strand, within Psest_1634at 1735.255 kb on + strand, within Psest_1634at 1735.256 kb on - strand, within Psest_1634at 1735.256 kb on - strand, within Psest_1634at 1735.713 kb on + strand, within Psest_1634at 1735.713 kb on + strand, within Psest_1634at 1735.714 kb on - strand, within Psest_1634at 1735.714 kb on - strand, within Psest_1634at 1735.714 kb on - strand, within Psest_1634at 1735.714 kb on - strand, within Psest_1634at 1735.792 kb on + strand, within Psest_1634at 1735.792 kb on + strand, within Psest_1634at 1735.793 kb on - strand, within Psest_1634at 1735.793 kb on - strand, within Psest_1634at 1735.793 kb on - strand, within Psest_1634at 1735.793 kb on - strand, within Psest_1634at 1735.793 kb on - strand, within Psest_1634at 1736.089 kb on + strandat 1736.089 kb on + strandat 1736.089 kb on + strandat 1736.090 kb on - strandat 1736.090 kb on - strandat 1736.253 kb on + strandat 1736.253 kb on + strandat 1736.270 kb on + strandat 1736.654 kb on + strand, within Psest_1635at 1736.654 kb on + strand, within Psest_1635at 1736.654 kb on + strand, within Psest_1635at 1736.697 kb on + strand, within Psest_1635at 1736.697 kb on + strand, within Psest_1635at 1736.698 kb on - strand, within Psest_1635at 1736.698 kb on - strand, within Psest_1635at 1736.698 kb on - strand, within Psest_1635at 1736.698 kb on - strand, within Psest_1635at 1736.698 kb on - strand, within Psest_1635at 1737.040 kb on - strand, within Psest_1635at 1737.086 kb on - strand, within Psest_1635at 1737.086 kb on - strand, within Psest_1635at 1737.086 kb on - strand, within Psest_1635at 1737.086 kb on - strand, within Psest_1635at 1737.118 kb on + strand, within Psest_1635at 1737.118 kb on + strand, within Psest_1635at 1737.119 kb on - strand, within Psest_1635at 1737.119 kb on - strand, within Psest_1635at 1737.119 kb on - strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.120 kb on + strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635at 1737.121 kb on - strand, within Psest_1635

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,733,352 + -0.1
1,733,352 + +2.0
1,733,352 + +1.0
1,733,353 - +0.1
1,733,353 - +0.8
1,733,353 - -0.6
1,733,353 - +0.7
1,733,353 - -0.4
1,733,353 - -0.0
1,733,353 - +0.4
1,733,353 - -0.0
1,733,461 + -1.8
1,733,461 + -0.4
1,733,461 + -0.6
1,733,462 - -1.4
1,733,462 - +0.0
1,733,462 - +0.1
1,733,511 + +0.5
1,733,639 + Psest_1633 0.18 +0.4
1,733,639 + Psest_1633 0.18 -3.3
1,733,639 + Psest_1633 0.18 +1.0
1,733,639 + Psest_1633 0.18 -0.5
1,733,640 - Psest_1633 0.18 +0.8
1,733,642 + Psest_1633 0.18 +0.4
1,733,642 + Psest_1633 0.18 -1.4
1,733,642 + Psest_1633 0.18 +0.2
1,733,642 + Psest_1633 0.18 -0.7
1,733,642 + Psest_1633 0.18 -0.0
1,733,642 + Psest_1633 0.18 +0.7
1,733,642 + Psest_1633 0.18 -0.6
1,733,643 - Psest_1633 0.18 +0.5
1,733,643 - Psest_1633 0.18 +0.4
1,733,643 - Psest_1633 0.18 -0.4
1,733,709 + Psest_1633 0.30 -0.0
1,733,710 - Psest_1633 0.30 +0.3
1,734,056 + +0.7
1,734,109 + +1.5
1,734,110 - +0.1
1,734,206 + -1.6
1,734,365 - +1.0
1,734,431 - Psest_1634 0.12 +0.3
1,734,431 - Psest_1634 0.12 -0.4
1,734,481 + Psest_1634 0.14 +1.4
1,734,560 - Psest_1634 0.18 +1.0
1,734,691 + Psest_1634 0.25 +1.3
1,734,691 + Psest_1634 0.25 +0.4
1,735,195 + Psest_1634 0.50 +2.0
1,735,255 + Psest_1634 0.53 +0.1
1,735,255 + Psest_1634 0.53 +0.6
1,735,255 + Psest_1634 0.53 +1.5
1,735,256 - Psest_1634 0.53 -0.0
1,735,256 - Psest_1634 0.53 +0.5
1,735,713 + Psest_1634 0.76 +1.0
1,735,713 + Psest_1634 0.76 +0.8
1,735,714 - Psest_1634 0.76 +0.5
1,735,714 - Psest_1634 0.76 +1.0
1,735,714 - Psest_1634 0.76 +1.8
1,735,714 - Psest_1634 0.76 +0.8
1,735,792 + Psest_1634 0.80 -0.1
1,735,792 + Psest_1634 0.80 +1.0
1,735,793 - Psest_1634 0.80 +1.0
1,735,793 - Psest_1634 0.80 +0.3
1,735,793 - Psest_1634 0.80 +0.1
1,735,793 - Psest_1634 0.80 +0.1
1,735,793 - Psest_1634 0.80 +0.5
1,736,089 + -1.2
1,736,089 + -1.6
1,736,089 + -0.4
1,736,090 - +1.4
1,736,090 - +1.0
1,736,253 + -1.1
1,736,253 + +0.7
1,736,270 + -0.0
1,736,654 + Psest_1635 0.15 +1.6
1,736,654 + Psest_1635 0.15 +1.8
1,736,654 + Psest_1635 0.15 +1.9
1,736,697 + Psest_1635 0.16 +1.4
1,736,697 + Psest_1635 0.16 +1.4
1,736,698 - Psest_1635 0.16 +1.5
1,736,698 - Psest_1635 0.16 +2.3
1,736,698 - Psest_1635 0.16 +1.5
1,736,698 - Psest_1635 0.16 +2.2
1,736,698 - Psest_1635 0.16 +2.1
1,737,040 - Psest_1635 0.29 +2.4
1,737,086 - Psest_1635 0.30 +0.5
1,737,086 - Psest_1635 0.30 +1.5
1,737,086 - Psest_1635 0.30 +1.9
1,737,086 - Psest_1635 0.30 +1.7
1,737,118 + Psest_1635 0.31 +1.1
1,737,118 + Psest_1635 0.31 +1.8
1,737,119 - Psest_1635 0.31 +2.1
1,737,119 - Psest_1635 0.31 +0.7
1,737,119 - Psest_1635 0.31 +1.8
1,737,120 + Psest_1635 0.32 +2.1
1,737,120 + Psest_1635 0.32 +1.7
1,737,120 + Psest_1635 0.32 +2.0
1,737,120 + Psest_1635 0.32 +1.2
1,737,120 + Psest_1635 0.32 +2.1
1,737,120 + Psest_1635 0.32 +1.7
1,737,120 + Psest_1635 0.32 +1.3
1,737,120 + Psest_1635 0.32 +1.2
1,737,120 + Psest_1635 0.32 +1.6
1,737,120 + Psest_1635 0.32 +0.9
1,737,121 - Psest_1635 0.32 +1.7
1,737,121 - Psest_1635 0.32 +2.1
1,737,121 - Psest_1635 0.32 +1.7
1,737,121 - Psest_1635 0.32 +2.2
1,737,121 - Psest_1635 0.32 +2.1
1,737,121 - Psest_1635 0.32 +1.9
1,737,121 - Psest_1635 0.32 +1.6
1,737,121 - Psest_1635 0.32 +2.0
1,737,121 - Psest_1635 0.32 +1.2
1,737,121 - Psest_1635 0.32 +1.7
1,737,121 - Psest_1635 0.32 +1.7

Or see this region's nucleotide sequence