Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1601

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1599 and Psest_1600 are separated by 8 nucleotidesPsest_1600 and Psest_1601 are separated by 81 nucleotidesPsest_1601 and Psest_1602 overlap by 4 nucleotidesPsest_1602 and Psest_1603 are separated by 139 nucleotides Psest_1599: Psest_1599 - heavy metal sensor kinase, at 1,702,596 to 1,703,960 _1599 Psest_1600: Psest_1600 - hypothetical protein, at 1,703,969 to 1,704,421 _1600 Psest_1601: Psest_1601 - Signal transduction histidine kinase, at 1,704,503 to 1,705,825 _1601 Psest_1602: Psest_1602 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,705,822 to 1,706,499 _1602 Psest_1603: Psest_1603 - Thiol:disulfide interchange protein, at 1,706,639 to 1,708,375 _1603 Position (kb) 1704 1705 1706Strain fitness (log2 ratio) -1 0 1 2at 1703.552 kb on - strand, within Psest_1599at 1703.559 kb on + strand, within Psest_1599at 1703.559 kb on + strand, within Psest_1599at 1703.559 kb on + strand, within Psest_1599at 1703.560 kb on - strand, within Psest_1599at 1703.560 kb on - strand, within Psest_1599at 1703.560 kb on - strand, within Psest_1599at 1703.563 kb on - strand, within Psest_1599at 1703.563 kb on - strand, within Psest_1599at 1703.563 kb on - strand, within Psest_1599at 1703.846 kb on + strandat 1703.879 kb on + strandat 1704.352 kb on + strand, within Psest_1600at 1704.353 kb on - strand, within Psest_1600at 1704.445 kb on + strandat 1704.446 kb on - strandat 1704.446 kb on - strandat 1704.634 kb on + strandat 1705.553 kb on + strand, within Psest_1601at 1705.554 kb on - strand, within Psest_1601at 1705.554 kb on - strand, within Psest_1601at 1705.920 kb on + strand, within Psest_1602at 1706.100 kb on - strand, within Psest_1602at 1706.100 kb on - strand, within Psest_1602at 1706.208 kb on - strand, within Psest_1602at 1706.526 kb on + strandat 1706.544 kb on - strandat 1706.622 kb on + strandat 1706.623 kb on - strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.626 kb on + strandat 1706.627 kb on - strandat 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.819 kb on + strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603at 1706.820 kb on - strand, within Psest_1603

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,703,552 - Psest_1599 0.70 +0.2
1,703,559 + Psest_1599 0.71 +1.6
1,703,559 + Psest_1599 0.71 +0.6
1,703,559 + Psest_1599 0.71 -0.0
1,703,560 - Psest_1599 0.71 -1.6
1,703,560 - Psest_1599 0.71 +0.2
1,703,560 - Psest_1599 0.71 -0.1
1,703,563 - Psest_1599 0.71 +0.7
1,703,563 - Psest_1599 0.71 -1.3
1,703,563 - Psest_1599 0.71 +0.1
1,703,846 + -1.0
1,703,879 + +1.1
1,704,352 + Psest_1600 0.85 +0.5
1,704,353 - Psest_1600 0.85 -0.2
1,704,445 + +0.1
1,704,446 - +1.0
1,704,446 - +0.7
1,704,634 + -0.4
1,705,553 + Psest_1601 0.79 +1.3
1,705,554 - Psest_1601 0.79 -0.8
1,705,554 - Psest_1601 0.79 +1.0
1,705,920 + Psest_1602 0.14 +0.2
1,706,100 - Psest_1602 0.41 -0.0
1,706,100 - Psest_1602 0.41 +0.5
1,706,208 - Psest_1602 0.57 +1.1
1,706,526 + +0.5
1,706,544 - +0.5
1,706,622 + +0.4
1,706,623 - +0.9
1,706,626 + +0.3
1,706,626 + -0.3
1,706,626 + +2.0
1,706,626 + +1.0
1,706,626 + +0.4
1,706,626 + -0.5
1,706,626 + +1.4
1,706,627 - -0.1
1,706,819 + Psest_1603 0.10 -0.1
1,706,819 + Psest_1603 0.10 +0.3
1,706,819 + Psest_1603 0.10 +0.5
1,706,819 + Psest_1603 0.10 -0.5
1,706,819 + Psest_1603 0.10 +0.4
1,706,820 - Psest_1603 0.10 +0.5
1,706,820 - Psest_1603 0.10 -0.0
1,706,820 - Psest_1603 0.10 +0.7
1,706,820 - Psest_1603 0.10 -0.0
1,706,820 - Psest_1603 0.10 +0.3
1,706,820 - Psest_1603 0.10 +0.2

Or see this region's nucleotide sequence