Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1597

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1596 and Psest_1597 are separated by 29 nucleotidesPsest_1597 and Psest_1598 are separated by 155 nucleotidesPsest_1598 and Psest_1599 overlap by 4 nucleotides Psest_1596: Psest_1596 - ATPase, P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase, at 1,698,981 to 1,701,500 _1596 Psest_1597: Psest_1597 - Protein of unknown function (DUF2933)., at 1,701,530 to 1,701,760 _1597 Psest_1598: Psest_1598 - heavy metal response regulator, at 1,701,916 to 1,702,599 _1598 Psest_1599: Psest_1599 - heavy metal sensor kinase, at 1,702,596 to 1,703,960 _1599 Position (kb) 1701 1702Strain fitness (log2 ratio) -2 -1 0 1 2at 1700.593 kb on + strand, within Psest_1596at 1700.783 kb on + strand, within Psest_1596at 1700.783 kb on + strand, within Psest_1596at 1700.784 kb on - strand, within Psest_1596at 1700.784 kb on - strand, within Psest_1596at 1701.282 kb on + strandat 1701.282 kb on + strandat 1701.282 kb on + strandat 1701.282 kb on + strandat 1701.282 kb on + strandat 1701.282 kb on + strandat 1701.282 kb on + strandat 1701.282 kb on + strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.283 kb on - strandat 1701.340 kb on - strandat 1701.663 kb on + strand, within Psest_1597at 1701.663 kb on + strand, within Psest_1597at 1701.663 kb on + strand, within Psest_1597at 1701.663 kb on + strand, within Psest_1597at 1701.664 kb on - strand, within Psest_1597at 1701.664 kb on - strand, within Psest_1597at 1701.796 kb on + strandat 1701.797 kb on - strandat 1701.806 kb on - strandat 1701.842 kb on + strandat 1701.843 kb on - strandat 1701.843 kb on - strandat 1701.870 kb on + strandat 1701.958 kb on + strandat 1701.959 kb on - strandat 1701.959 kb on - strandat 1701.959 kb on - strandat 1702.048 kb on + strand, within Psest_1598at 1702.207 kb on + strand, within Psest_1598at 1702.207 kb on + strand, within Psest_1598at 1702.208 kb on - strand, within Psest_1598at 1702.255 kb on - strand, within Psest_1598at 1702.359 kb on + strand, within Psest_1598at 1702.360 kb on - strand, within Psest_1598at 1702.570 kb on + strandat 1702.570 kb on + strandat 1702.570 kb on + strandat 1702.571 kb on - strandat 1702.571 kb on - strandat 1702.724 kb on + strandat 1702.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,700,593 + Psest_1596 0.64 +0.2
1,700,783 + Psest_1596 0.72 -0.8
1,700,783 + Psest_1596 0.72 -0.0
1,700,784 - Psest_1596 0.72 +0.5
1,700,784 - Psest_1596 0.72 -0.3
1,701,282 + +0.2
1,701,282 + +2.0
1,701,282 + +0.8
1,701,282 + -0.2
1,701,282 + +0.7
1,701,282 + +0.5
1,701,282 + +0.5
1,701,282 + -0.4
1,701,283 - +0.2
1,701,283 - +0.4
1,701,283 - +0.1
1,701,283 - -0.3
1,701,283 - +1.0
1,701,283 - +2.0
1,701,283 - +0.8
1,701,283 - +1.5
1,701,283 - -0.8
1,701,283 - +0.5
1,701,283 - +0.1
1,701,283 - +0.4
1,701,283 - +0.1
1,701,283 - +1.2
1,701,340 - -0.6
1,701,663 + Psest_1597 0.58 +0.4
1,701,663 + Psest_1597 0.58 +0.5
1,701,663 + Psest_1597 0.58 +0.5
1,701,663 + Psest_1597 0.58 +0.1
1,701,664 - Psest_1597 0.58 +0.7
1,701,664 - Psest_1597 0.58 +0.8
1,701,796 + -0.5
1,701,797 - +0.4
1,701,806 - +0.5
1,701,842 + +1.4
1,701,843 - +0.4
1,701,843 - +0.6
1,701,870 + +0.4
1,701,958 + -0.6
1,701,959 - +0.5
1,701,959 - -0.7
1,701,959 - -0.0
1,702,048 + Psest_1598 0.19 -0.7
1,702,207 + Psest_1598 0.43 +1.0
1,702,207 + Psest_1598 0.43 +0.3
1,702,208 - Psest_1598 0.43 -0.4
1,702,255 - Psest_1598 0.50 +0.2
1,702,359 + Psest_1598 0.65 -0.1
1,702,360 - Psest_1598 0.65 -0.2
1,702,570 + -1.0
1,702,570 + -0.5
1,702,570 + +0.3
1,702,571 - +1.1
1,702,571 - -2.3
1,702,724 + +0.4
1,702,725 - -0.5

Or see this region's nucleotide sequence