Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1571 and Psest_1572 are separated by 301 nucleotides Psest_1572 and Psest_1573 overlap by 4 nucleotides Psest_1573 and Psest_1574 are separated by 132 nucleotides
Psest_1571: Psest_1571 - cytochrome c oxidase accessory protein FixG, at 1,673,488 to 1,674,906
_1571
Psest_1572: Psest_1572 - Putative effector of murein hydrolase LrgA, at 1,675,208 to 1,675,573
_1572
Psest_1573: Psest_1573 - Putative effector of murein hydrolase, at 1,675,570 to 1,676,280
_1573
Psest_1574: Psest_1574 - phenazine biosynthesis protein PhzF family, at 1,676,413 to 1,677,204
_1574
Position (kb)
1675
1676
1677 Strain fitness (log2 ratio)
-2
-1
0
1 at 1674.673 kb on - strand, within Psest_1571 at 1674.673 kb on - strand, within Psest_1571 at 1674.813 kb on + strand at 1674.921 kb on + strand at 1674.991 kb on + strand at 1675.166 kb on + strand at 1675.166 kb on + strand at 1675.167 kb on - strand at 1675.389 kb on - strand, within Psest_1572 at 1675.759 kb on + strand, within Psest_1573 at 1675.760 kb on - strand, within Psest_1573 at 1676.146 kb on + strand, within Psest_1573 at 1676.318 kb on + strand at 1676.945 kb on + strand, within Psest_1574 at 1676.946 kb on - strand, within Psest_1574 at 1676.946 kb on - strand, within Psest_1574 at 1676.946 kb on - strand, within Psest_1574 at 1676.989 kb on + strand, within Psest_1574 at 1676.990 kb on - strand, within Psest_1574 at 1676.990 kb on - strand, within Psest_1574 at 1677.203 kb on - strand at 1677.210 kb on + strand at 1677.210 kb on + strand at 1677.210 kb on + strand at 1677.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,674,673 - Psest_1571 0.84 -0.8 1,674,673 - Psest_1571 0.84 +0.5 1,674,813 + +0.3 1,674,921 + +0.3 1,674,991 + +1.1 1,675,166 + +0.1 1,675,166 + +0.5 1,675,167 - -0.3 1,675,389 - Psest_1572 0.49 -0.0 1,675,759 + Psest_1573 0.27 -0.0 1,675,760 - Psest_1573 0.27 +0.1 1,676,146 + Psest_1573 0.81 +0.8 1,676,318 + +1.0 1,676,945 + Psest_1574 0.67 +1.5 1,676,946 - Psest_1574 0.67 +0.8 1,676,946 - Psest_1574 0.67 +1.7 1,676,946 - Psest_1574 0.67 -0.0 1,676,989 + Psest_1574 0.73 -0.2 1,676,990 - Psest_1574 0.73 +1.7 1,676,990 - Psest_1574 0.73 +1.0 1,677,203 - -0.5 1,677,210 + -2.2 1,677,210 + +1.0 1,677,210 + -0.2 1,677,210 + +0.7
Or see this region's nucleotide sequence