Experiment: m.b. Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1477 and HP15_tRNA27 are separated by 82 nucleotides HP15_tRNA27 and HP15_1478 are separated by 35 nucleotides HP15_1478 and HP15_1479 are separated by 14 nucleotides
HP15_1477: HP15_1477 - flagellar hook-associated protein FlgL, at 1,552,659 to 1,553,882
_1477
HP15_tRNA27: HP15_tRNA27 - tRNA-Leu, at 1,553,965 to 1,554,051
_tRNA27
HP15_1478: HP15_1478 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,554,087 to 1,555,190
_1478
HP15_1479: HP15_1479 - queuine tRNA-ribosyltransferase, at 1,555,205 to 1,556,326
_1479
Position (kb) 1554
1555
1556 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1553.111 kb on + strand, within HP15_1477 at 1553.178 kb on + strand, within HP15_1477 at 1553.186 kb on - strand, within HP15_1477 at 1553.186 kb on - strand, within HP15_1477 at 1553.309 kb on - strand, within HP15_1477 at 1553.326 kb on - strand, within HP15_1477 at 1553.326 kb on - strand, within HP15_1477 at 1553.346 kb on - strand, within HP15_1477 at 1553.346 kb on - strand, within HP15_1477 at 1553.437 kb on + strand, within HP15_1477 at 1553.445 kb on - strand, within HP15_1477 at 1553.572 kb on - strand, within HP15_1477 at 1553.574 kb on + strand, within HP15_1477 at 1553.605 kb on - strand, within HP15_1477 at 1553.684 kb on - strand, within HP15_1477 at 1553.779 kb on + strand at 1553.787 kb on - strand at 1553.787 kb on - strand at 1553.941 kb on + strand at 1553.941 kb on + strand at 1554.223 kb on + strand, within HP15_1478 at 1554.272 kb on + strand, within HP15_1478 at 1554.458 kb on + strand, within HP15_1478 at 1554.483 kb on - strand, within HP15_1478 at 1554.498 kb on - strand, within HP15_1478 at 1554.578 kb on - strand, within HP15_1478 at 1554.768 kb on - strand, within HP15_1478 at 1555.282 kb on - strand at 1555.282 kb on - strand at 1555.305 kb on + strand at 1555.315 kb on + strand at 1555.385 kb on - strand, within HP15_1479 at 1555.385 kb on - strand, within HP15_1479 at 1555.401 kb on + strand, within HP15_1479 at 1555.409 kb on - strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.460 kb on + strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.931 kb on + strand, within HP15_1479 at 1556.000 kb on - strand, within HP15_1479 at 1556.071 kb on - strand, within HP15_1479
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml remove 1,553,111 + HP15_1477 0.37 +0.4 1,553,178 + HP15_1477 0.42 +0.3 1,553,186 - HP15_1477 0.43 +0.9 1,553,186 - HP15_1477 0.43 +0.7 1,553,309 - HP15_1477 0.53 +0.4 1,553,326 - HP15_1477 0.54 +0.6 1,553,326 - HP15_1477 0.54 +1.5 1,553,346 - HP15_1477 0.56 +0.4 1,553,346 - HP15_1477 0.56 -0.3 1,553,437 + HP15_1477 0.64 +1.5 1,553,445 - HP15_1477 0.64 +1.9 1,553,572 - HP15_1477 0.75 +0.4 1,553,574 + HP15_1477 0.75 -0.1 1,553,605 - HP15_1477 0.77 -1.8 1,553,684 - HP15_1477 0.84 +0.7 1,553,779 + -0.5 1,553,787 - +1.0 1,553,787 - +0.5 1,553,941 + -0.9 1,553,941 + +0.7 1,554,223 + HP15_1478 0.12 -2.1 1,554,272 + HP15_1478 0.17 +0.1 1,554,458 + HP15_1478 0.34 -0.3 1,554,483 - HP15_1478 0.36 -2.7 1,554,498 - HP15_1478 0.37 -0.8 1,554,578 - HP15_1478 0.44 -4.3 1,554,768 - HP15_1478 0.62 -3.5 1,555,282 - -2.5 1,555,282 - -1.1 1,555,305 + -3.1 1,555,315 + -0.5 1,555,385 - HP15_1479 0.16 -3.2 1,555,385 - HP15_1479 0.16 -1.9 1,555,401 + HP15_1479 0.17 -1.1 1,555,409 - HP15_1479 0.18 -0.6 1,555,455 + HP15_1479 0.22 -2.2 1,555,455 + HP15_1479 0.22 -2.8 1,555,455 + HP15_1479 0.22 -3.2 1,555,460 + HP15_1479 0.23 -0.5 1,555,463 - HP15_1479 0.23 -2.7 1,555,463 - HP15_1479 0.23 -4.1 1,555,463 - HP15_1479 0.23 -1.9 1,555,463 - HP15_1479 0.23 -3.3 1,555,931 + HP15_1479 0.65 -2.8 1,556,000 - HP15_1479 0.71 -2.0 1,556,071 - HP15_1479 0.77 -1.4
Or see this region's nucleotide sequence