Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1287

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1286 and Psest_1287 are separated by 143 nucleotidesPsest_1287 and Psest_1288 are separated by 109 nucleotides Psest_1286: Psest_1286 - inosine-5'-monophosphate dehydrogenase, at 1,390,430 to 1,391,899 _1286 Psest_1287: Psest_1287 - GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit, at 1,392,043 to 1,393,623 _1287 Psest_1288: Psest_1288 - Putative multicopper oxidases, at 1,393,733 to 1,395,103 _1288 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -1 0 1 2at 1391.980 kb on + strandat 1393.662 kb on - strandat 1393.850 kb on + strandat 1393.850 kb on + strandat 1393.850 kb on + strandat 1393.917 kb on - strand, within Psest_1288at 1394.058 kb on - strand, within Psest_1288at 1394.061 kb on + strand, within Psest_1288at 1394.400 kb on + strand, within Psest_1288at 1394.401 kb on - strand, within Psest_1288at 1394.417 kb on - strand, within Psest_1288at 1394.417 kb on - strand, within Psest_1288at 1394.462 kb on + strand, within Psest_1288at 1394.462 kb on + strand, within Psest_1288at 1394.462 kb on + strand, within Psest_1288at 1394.463 kb on - strand, within Psest_1288at 1394.463 kb on - strand, within Psest_1288at 1394.463 kb on - strand, within Psest_1288

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,391,980 + -0.8
1,393,662 - +0.2
1,393,850 + -0.1
1,393,850 + -0.1
1,393,850 + -1.3
1,393,917 - Psest_1288 0.13 -0.7
1,394,058 - Psest_1288 0.24 +0.7
1,394,061 + Psest_1288 0.24 +0.5
1,394,400 + Psest_1288 0.49 +0.1
1,394,401 - Psest_1288 0.49 +0.7
1,394,417 - Psest_1288 0.50 +0.0
1,394,417 - Psest_1288 0.50 +0.7
1,394,462 + Psest_1288 0.53 +1.1
1,394,462 + Psest_1288 0.53 +2.3
1,394,462 + Psest_1288 0.53 +0.4
1,394,463 - Psest_1288 0.53 +0.8
1,394,463 - Psest_1288 0.53 +0.4
1,394,463 - Psest_1288 0.53 +0.0

Or see this region's nucleotide sequence