Experiment: m.b. Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1115 and HP15_1116 overlap by 4 nucleotides HP15_1116 and HP15_1117 are separated by 9 nucleotides HP15_1117 and HP15_1118 are separated by 508 nucleotides
HP15_1115: HP15_1115 - 4-hydroxy-2-ketovalerate aldolase, at 1,142,070 to 1,143,107
_1115
HP15_1116: HP15_1116 - hydratase/decarboxylase, at 1,143,104 to 1,143,898
_1116
HP15_1117: HP15_1117 - 4-oxalocrotonate tautomerase, at 1,143,908 to 1,144,099
_1117
HP15_1118: HP15_1118 - transporter, AcrB/D/F family, at 1,144,608 to 1,147,646
_1118
Position (kb)
1143
1144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1142.150 kb on - strand at 1142.194 kb on - strand, within HP15_1115 at 1142.200 kb on - strand, within HP15_1115 at 1142.214 kb on - strand, within HP15_1115 at 1142.240 kb on - strand, within HP15_1115 at 1142.511 kb on + strand, within HP15_1115 at 1142.647 kb on - strand, within HP15_1115 at 1142.673 kb on + strand, within HP15_1115 at 1142.675 kb on + strand, within HP15_1115 at 1142.681 kb on - strand, within HP15_1115 at 1142.681 kb on - strand, within HP15_1115 at 1142.683 kb on - strand, within HP15_1115 at 1142.690 kb on + strand, within HP15_1115 at 1142.756 kb on + strand, within HP15_1115 at 1142.922 kb on - strand, within HP15_1115 at 1142.967 kb on - strand, within HP15_1115 at 1143.133 kb on - strand at 1143.263 kb on - strand, within HP15_1116 at 1143.321 kb on - strand, within HP15_1116 at 1143.323 kb on + strand, within HP15_1116 at 1143.394 kb on + strand, within HP15_1116 at 1143.398 kb on - strand, within HP15_1116 at 1143.407 kb on + strand, within HP15_1116 at 1143.448 kb on + strand, within HP15_1116 at 1143.463 kb on - strand, within HP15_1116 at 1143.486 kb on + strand, within HP15_1116 at 1143.490 kb on + strand, within HP15_1116 at 1143.522 kb on + strand, within HP15_1116 at 1143.654 kb on + strand, within HP15_1116 at 1143.662 kb on - strand, within HP15_1116 at 1143.686 kb on + strand, within HP15_1116 at 1143.718 kb on - strand, within HP15_1116 at 1143.721 kb on - strand, within HP15_1116 at 1143.728 kb on + strand, within HP15_1116 at 1143.729 kb on + strand, within HP15_1116 at 1143.784 kb on + strand, within HP15_1116 at 1143.865 kb on + strand at 1143.901 kb on - strand at 1144.093 kb on + strand at 1144.185 kb on + strand at 1144.312 kb on + strand at 1144.504 kb on - strand at 1144.504 kb on - strand at 1144.545 kb on + strand at 1144.545 kb on + strand at 1144.550 kb on + strand at 1144.550 kb on + strand at 1144.717 kb on + strand at 1144.717 kb on + strand at 1144.717 kb on + strand at 1144.725 kb on - strand at 1144.725 kb on - strand at 1144.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml remove 1,142,150 - -1.4 1,142,194 - HP15_1115 0.12 +0.2 1,142,200 - HP15_1115 0.13 +0.4 1,142,214 - HP15_1115 0.14 +0.9 1,142,240 - HP15_1115 0.16 -0.4 1,142,511 + HP15_1115 0.42 +0.4 1,142,647 - HP15_1115 0.56 -0.1 1,142,673 + HP15_1115 0.58 -0.1 1,142,675 + HP15_1115 0.58 +0.0 1,142,681 - HP15_1115 0.59 -0.0 1,142,681 - HP15_1115 0.59 -0.2 1,142,683 - HP15_1115 0.59 +0.9 1,142,690 + HP15_1115 0.60 +1.1 1,142,756 + HP15_1115 0.66 -0.2 1,142,922 - HP15_1115 0.82 +0.6 1,142,967 - HP15_1115 0.86 -1.2 1,143,133 - -0.4 1,143,263 - HP15_1116 0.20 -0.4 1,143,321 - HP15_1116 0.27 -2.4 1,143,323 + HP15_1116 0.28 +0.3 1,143,394 + HP15_1116 0.36 +0.2 1,143,398 - HP15_1116 0.37 +0.7 1,143,407 + HP15_1116 0.38 -0.2 1,143,448 + HP15_1116 0.43 +0.2 1,143,463 - HP15_1116 0.45 -1.0 1,143,486 + HP15_1116 0.48 +1.1 1,143,490 + HP15_1116 0.49 +0.9 1,143,522 + HP15_1116 0.53 +0.9 1,143,654 + HP15_1116 0.69 -1.4 1,143,662 - HP15_1116 0.70 +0.7 1,143,686 + HP15_1116 0.73 -0.6 1,143,718 - HP15_1116 0.77 +0.3 1,143,721 - HP15_1116 0.78 +0.6 1,143,728 + HP15_1116 0.78 -0.9 1,143,729 + HP15_1116 0.79 +2.9 1,143,784 + HP15_1116 0.86 -0.0 1,143,865 + -0.8 1,143,901 - -0.2 1,144,093 + -0.7 1,144,185 + -0.5 1,144,312 + -0.0 1,144,504 - -0.1 1,144,504 - -0.1 1,144,545 + -0.2 1,144,545 + +0.5 1,144,550 + -0.3 1,144,550 + +0.2 1,144,717 + +0.4 1,144,717 + -0.2 1,144,717 + +0.3 1,144,725 - +0.9 1,144,725 - +1.6 1,144,774 - +1.2
Or see this region's nucleotide sequence