Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1167

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1165 and Psest_1166 are separated by 93 nucleotidesPsest_1166 and Psest_1167 are separated by 5 nucleotidesPsest_1167 and Psest_1168 are separated by 358 nucleotides Psest_1165: Psest_1165 - Lysine efflux permease, at 1,266,801 to 1,267,409 _1165 Psest_1166: Psest_1166 - transcriptional regulator, ArgP family, at 1,267,503 to 1,268,393 _1166 Psest_1167: Psest_1167 - hypothetical protein, at 1,268,399 to 1,268,668 _1167 Psest_1168: Psest_1168 - hypothetical protein, at 1,269,027 to 1,269,953 _1168 Position (kb) 1268 1269Strain fitness (log2 ratio) -2 -1 0 1at 1267.461 kb on - strandat 1267.476 kb on + strandat 1267.486 kb on + strandat 1267.493 kb on - strandat 1267.512 kb on + strandat 1267.513 kb on - strandat 1267.600 kb on + strand, within Psest_1166at 1268.115 kb on + strand, within Psest_1166at 1268.302 kb on - strand, within Psest_1166at 1268.319 kb on - strandat 1268.424 kb on + strandat 1268.424 kb on + strandat 1268.438 kb on - strand, within Psest_1167at 1268.720 kb on + strandat 1268.740 kb on - strandat 1268.740 kb on - strandat 1268.822 kb on + strandat 1268.822 kb on + strandat 1268.823 kb on - strandat 1268.984 kb on - strandat 1268.985 kb on + strandat 1268.985 kb on + strandat 1269.060 kb on - strandat 1269.300 kb on + strand, within Psest_1168

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,267,461 - +0.1
1,267,476 + +0.8
1,267,486 + +0.2
1,267,493 - -0.9
1,267,512 + +0.4
1,267,513 - +1.2
1,267,600 + Psest_1166 0.11 -0.3
1,268,115 + Psest_1166 0.69 -0.5
1,268,302 - Psest_1166 0.90 +0.5
1,268,319 - -0.0
1,268,424 + +0.2
1,268,424 + -2.5
1,268,438 - Psest_1167 0.14 +0.8
1,268,720 + -0.0
1,268,740 - +0.7
1,268,740 - +0.1
1,268,822 + +0.0
1,268,822 + -0.7
1,268,823 - +0.3
1,268,984 - +1.1
1,268,985 + +0.5
1,268,985 + -0.9
1,269,060 - +0.4
1,269,300 + Psest_1168 0.29 +0.9

Or see this region's nucleotide sequence