Strain Fitness in Shewanella amazonensis SB2B around Sama_1401

Experiment: D-Cellobiose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cellobiose
1,698,907	-				+9.6
1,698,907	-				+9.5
1,698,907	-				+11.2
1,698,962	-		Sama_1400	0.13	+9.3
1,698,988	+		Sama_1400	0.16	+9.7
1,698,989	-		Sama_1400	0.16	+8.2
1,698,989	-		Sama_1400	0.16	+9.7
1,698,989	-		Sama_1400	0.16	+10.0
1,698,989	-		Sama_1400	0.16	+9.3
1,698,989	-		Sama_1400	0.16	+9.3
1,698,990	+		Sama_1400	0.16	+10.0
1,698,990	+		Sama_1400	0.16	+8.3
1,698,990	+		Sama_1400	0.16	+9.3
1,698,991	-		Sama_1400	0.16	+10.2
1,698,991	-		Sama_1400	0.16	+8.8
1,698,991	-		Sama_1400	0.16	+8.4
1,699,006	+		Sama_1400	0.18	+7.8
1,699,007	-		Sama_1400	0.18	+9.1
1,699,071	-		Sama_1400	0.24	+9.5
1,699,156	-		Sama_1400	0.33	+9.1
1,699,156	-		Sama_1400	0.33	+9.3
1,699,185	+		Sama_1400	0.36	+9.4
1,699,185	+		Sama_1400	0.36	+10.0
1,699,185	+		Sama_1400	0.36	+10.0
1,699,186	-		Sama_1400	0.36	+9.8
1,699,186	-		Sama_1400	0.36	+10.5
1,699,268	-		Sama_1400	0.44	+9.7
1,699,268	-		Sama_1400	0.44	+9.8
1,699,285	+		Sama_1400	0.46	+9.3
1,699,286	-		Sama_1400	0.46	+9.7
1,699,286	-		Sama_1400	0.46	+10.2
1,699,287	+		Sama_1400	0.46	+10.0
1,699,287	+		Sama_1400	0.46	+10.5
1,699,287	+		Sama_1400	0.46	+9.9
1,699,287	+		Sama_1400	0.46	+9.3
1,699,287	+		Sama_1400	0.46	+9.8
1,699,287	+		Sama_1400	0.46	+10.3
1,699,287	+		Sama_1400	0.46	+10.3
1,699,287	+		Sama_1400	0.46	+8.7
1,699,287	+		Sama_1400	0.46	+10.4
1,699,287	+		Sama_1400	0.46	+8.7
1,699,287	+		Sama_1400	0.46	+10.0
1,699,287	+		Sama_1400	0.46	+8.8
1,699,288	-		Sama_1400	0.46	+9.9
1,699,288	-		Sama_1400	0.46	-2.2
1,699,288	-		Sama_1400	0.46	+8.2
1,699,288	-		Sama_1400	0.46	+10.1
1,699,288	-		Sama_1400	0.46	+10.0
1,699,288	-		Sama_1400	0.46	+9.2
1,699,288	-		Sama_1400	0.46	+9.7
1,699,288	-		Sama_1400	0.46	+10.2
1,699,288	-		Sama_1400	0.46	+10.1
1,699,288	-		Sama_1400	0.46	+9.9
1,699,288	-		Sama_1400	0.46	+9.9
1,699,288	-		Sama_1400	0.46	+10.5
1,699,288	-		Sama_1400	0.46	+10.5
1,699,288	-		Sama_1400	0.46	+8.5
1,699,288	-		Sama_1400	0.46	+10.2
1,699,288	-		Sama_1400	0.46	+9.7
1,699,288	-		Sama_1400	0.46	+8.6
1,699,288	-		Sama_1400	0.46	+9.7
1,699,288	-		Sama_1400	0.46	+10.3
1,699,288	-		Sama_1400	0.46	+10.2
1,699,288	-		Sama_1400	0.46	+10.6
1,699,288	-		Sama_1400	0.46	+9.7
1,699,288	-		Sama_1400	0.46	+10.4
1,699,288	-		Sama_1400	0.46	+10.8
1,699,288	-		Sama_1400	0.46	+10.4
1,699,293	-		Sama_1400	0.46	+9.2
1,699,561	+		Sama_1400	0.73	+10.2
1,699,609	-		Sama_1400	0.78	+9.5
1,699,816	-				+8.3
1,699,847	+				+9.0
1,699,848	-				+3.1
1,699,848	-				+4.2
1,699,848	-				+1.1
1,699,850	+				+9.9
1,699,850	+				+8.9
1,699,850	+				+9.4
1,699,850	+				+9.3
1,699,850	+				+8.8
1,699,851	-				+1.2
1,699,851	-				+1.5
1,699,851	-				+6.6
1,699,851	-				+4.0
1,699,851	-				+2.4
1,699,851	-				+4.8
1,699,851	-				-1.2
1,699,851	-				+3.3
1,699,851	-				+5.1
1,699,851	-				+2.5
1,699,851	-				+3.2
1,699,851	-				-0.6
1,699,851	-				+1.9
1,699,851	-				+4.4
1,699,851	-				+3.8
1,699,851	-				-0.4
1,699,851	-				-0.1
1,699,851	-				+0.3
1,699,856	+				+9.8
1,699,856	+				+9.7
1,699,856	+				+9.8
1,699,856	+				+9.4
1,699,857	-				-0.1
1,699,857	-				-1.7
1,699,857	-				+1.6
1,699,857	-				+3.5
1,699,857	-				+4.4
1,699,857	-				+3.8
1,699,857	-				-1.4
1,699,885	+				-2.2
1,699,920	+				+0.6
1,699,920	+				-2.5
1,699,920	+				-3.7
1,699,920	+				-3.7
1,699,920	+				-1.7
1,699,920	+				-2.4
1,699,920	+				-3.9
1,699,920	+				-1.7
1,699,920	+				-1.7
1,699,921	-				-0.9
1,699,921	-				-3.0
1,699,921	-				-3.1
1,699,922	+				-3.3
1,699,922	+				-2.8
1,699,923	-				-1.7
1,700,091	+		Sama_1401	0.18	-2.1
1,700,143	-		Sama_1401	0.22	-1.4
1,700,154	-		Sama_1401	0.22	-1.9
1,700,225	+		Sama_1401	0.28	-2.2
1,700,225	+		Sama_1401	0.28	-1.9
1,700,226	-		Sama_1401	0.28	-1.9
1,700,226	-		Sama_1401	0.28	-2.2
1,700,226	-		Sama_1401	0.28	-3.1
1,700,246	+		Sama_1401	0.29	+0.6
1,700,247	-		Sama_1401	0.29	-3.3
1,700,247	-		Sama_1401	0.29	-3.6
1,700,247	-		Sama_1401	0.29	-3.3
1,700,295	+		Sama_1401	0.33	-1.9
1,700,312	+		Sama_1401	0.34	-1.7
1,700,312	+		Sama_1401	0.34	-2.5
1,700,312	+		Sama_1401	0.34	-0.7
1,700,312	+		Sama_1401	0.34	-3.3
1,700,312	+		Sama_1401	0.34	-3.4
1,700,313	-		Sama_1401	0.34	-2.5
1,700,313	-		Sama_1401	0.34	-3.5
1,700,313	-		Sama_1401	0.34	-0.9
1,700,326	-		Sama_1401	0.35	-2.2
1,700,326	-		Sama_1401	0.35	-3.8
1,700,429	+		Sama_1401	0.43	-1.4
1,700,429	+		Sama_1401	0.43	-1.7
1,700,429	+		Sama_1401	0.43	-3.6
1,700,430	-		Sama_1401	0.43	-2.5
1,700,430	-		Sama_1401	0.43	-1.7
1,700,438	+		Sama_1401	0.44	-3.3
1,700,438	+		Sama_1401	0.44	-3.4
1,700,441	+		Sama_1401	0.44	-3.9
1,700,442	-		Sama_1401	0.44	-2.8
1,700,442	-		Sama_1401	0.44	-3.6
1,700,442	-		Sama_1401	0.44	+0.6
1,700,442	-		Sama_1401	0.44	-3.7
1,700,442	-		Sama_1401	0.44	-2.7
1,700,442	-		Sama_1401	0.44	-2.5
1,700,442	-		Sama_1401	0.44	-2.9
1,700,460	+		Sama_1401	0.45	-2.7
1,700,460	+		Sama_1401	0.45	-2.9
1,700,460	+		Sama_1401	0.45	-2.4
1,700,460	+		Sama_1401	0.45	-0.9
1,700,461	-		Sama_1401	0.45	-4.4
1,700,465	-		Sama_1401	0.46	-1.7
1,700,608	+		Sama_1401	0.56	-3.4
1,700,631	+		Sama_1401	0.58	-4.7
1,700,631	+		Sama_1401	0.58	-3.4
1,700,631	+		Sama_1401	0.58	-2.8
1,700,632	-		Sama_1401	0.58	-3.4
1,700,645	-		Sama_1401	0.59	-2.8
1,700,658	-		Sama_1401	0.60	-3.2
1,700,743	+		Sama_1401	0.67	-2.9
1,700,743	+		Sama_1401	0.67	-2.8
1,700,744	-		Sama_1401	0.67	-3.5
1,700,744	-		Sama_1401	0.67	-3.2
1,700,744	-		Sama_1401	0.67	-1.7
1,700,754	-		Sama_1401	0.67	-0.9
1,700,813	+		Sama_1401	0.72	-1.4
1,700,813	+		Sama_1401	0.72	-1.9
1,700,814	-		Sama_1401	0.72	-3.1
1,700,814	-		Sama_1401	0.72	-1.4
1,700,814	-		Sama_1401	0.72	-3.2
1,700,820	+		Sama_1401	0.72	-1.4
1,700,821	-		Sama_1401	0.72	-3.1
1,700,855	+		Sama_1401	0.75	-1.4
1,700,855	+		Sama_1401	0.75	-3.5
1,700,855	+		Sama_1401	0.75	-1.7
1,700,855	+		Sama_1401	0.75	-1.9
1,700,856	-		Sama_1401	0.75	-2.9
1,700,856	-		Sama_1401	0.75	-2.9
1,700,856	-		Sama_1401	0.75	-4.4
1,700,856	-		Sama_1401	0.75	-0.4
1,700,870	+		Sama_1401	0.76	-3.1
1,700,871	-		Sama_1401	0.76	-2.5
1,700,907	+		Sama_1401	0.79	-4.4
1,700,908	-		Sama_1401	0.79	-0.9
1,700,917	+		Sama_1401	0.80	-2.5
1,700,917	+		Sama_1401	0.80	-1.8
1,700,918	-		Sama_1401	0.80	-3.4
1,700,918	-		Sama_1401	0.80	-3.4
1,700,953	+		Sama_1401	0.82	-2.4
1,700,953	+		Sama_1401	0.82	-2.2
1,700,953	+		Sama_1401	0.82	-2.4
1,700,953	+		Sama_1401	0.82	-3.6
1,700,953	+		Sama_1401	0.82	-2.7
1,700,953	+		Sama_1401	0.82	-4.3
1,700,953	+		Sama_1401	0.82	-0.9
1,700,954	-		Sama_1401	0.82	+0.6
1,700,954	-		Sama_1401	0.82	-0.9
1,700,954	-		Sama_1401	0.82	-4.2
1,700,954	-		Sama_1401	0.82	-3.5
1,700,954	-		Sama_1401	0.82	-1.4
1,700,954	-		Sama_1401	0.82	-3.4
1,700,957	+		Sama_1401	0.83	-3.9
1,700,957	+		Sama_1401	0.83	-4.2
1,700,957	+		Sama_1401	0.83	-2.8
1,700,958	-		Sama_1401	0.83	-2.4
1,700,958	-		Sama_1401	0.83	-2.2
1,700,958	-		Sama_1401	0.83	-4.0
1,701,003	-		Sama_1401	0.86	-0.9
1,701,040	+		Sama_1401	0.89	-1.7
1,701,040	+		Sama_1401	0.89	-3.6
1,701,041	-		Sama_1401	0.89	-1.7
1,701,065	+				-2.5
1,701,066	-				-3.6
1,701,066	-				-3.1
1,701,077	-				-2.2
1,701,088	-				-2.7
1,701,093	+				-1.9
1,701,093	+				-1.4
1,701,096	-				-2.5
1,701,205	+				-3.6
1,701,206	-				-0.4
1,701,206	-				-0.1
1,701,208	+				-0.8
1,701,209	-				-0.2
1,701,209	-				-1.4
1,701,250	+				-3.1
1,701,250	+				-2.4
1,701,251	-				-3.0
1,701,292	+				-3.1
1,701,301	+				-3.4
1,701,301	+				-2.4
1,701,301	+				-3.4
1,701,302	-				-3.4
1,701,302	-				-2.5
1,701,399	-		Sama_1402	0.14	-3.5
1,701,508	+		Sama_1402	0.22	-0.9
1,701,509	-		Sama_1402	0.22	-0.9
1,701,509	-		Sama_1402	0.22	-2.8
1,701,524	+		Sama_1402	0.23	-4.1
1,701,650	-		Sama_1402	0.33	-1.7
1,701,664	+		Sama_1402	0.34	-2.2
1,701,664	+		Sama_1402	0.34	-3.3
1,701,664	+		Sama_1402	0.34	-2.8
1,701,667	+		Sama_1402	0.34	-0.1
1,701,667	+		Sama_1402	0.34	-2.2
1,701,667	+		Sama_1402	0.34	-2.2
1,701,667	+		Sama_1402	0.34	-1.7
1,701,667	+		Sama_1402	0.34	-1.9
1,701,667	+		Sama_1402	0.34	-2.2
1,701,668	-		Sama_1402	0.34	-2.9
1,701,682	+		Sama_1402	0.35	-2.2
1,701,695	+		Sama_1402	0.36	+0.6
1,701,695	+		Sama_1402	0.36	-0.9
1,701,696	-		Sama_1402	0.36	-3.4
1,701,704	+		Sama_1402	0.37	-1.2
1,701,710	+		Sama_1402	0.37	-3.1
1,701,797	-		Sama_1402	0.43	-1.7
1,701,811	+		Sama_1402	0.44	-0.7
1,701,811	+		Sama_1402	0.44	-1.7
1,701,811	+		Sama_1402	0.44	-3.3
1,701,812	-		Sama_1402	0.45	-2.4
1,701,812	-		Sama_1402	0.45	-1.2
1,701,860	-		Sama_1402	0.48	-2.4
1,701,860	-		Sama_1402	0.48	-3.4
1,701,882	-		Sama_1402	0.50	-1.7
1,701,888	+		Sama_1402	0.50	-2.1
1,701,889	-		Sama_1402	0.50	+0.6
1,701,889	-		Sama_1402	0.50	-1.1
1,701,939	-		Sama_1402	0.54	-3.4
1,702,010	+		Sama_1402	0.59	-1.7
1,702,011	-		Sama_1402	0.59	-2.7
1,702,063	+		Sama_1402	0.63	-3.4
1,702,063	+		Sama_1402	0.63	-1.4
1,702,063	+		Sama_1402	0.63	-4.8
1,702,064	-		Sama_1402	0.63	-4.4
1,702,069	+		Sama_1402	0.63	-2.8
1,702,069	+		Sama_1402	0.63	-2.8
1,702,070	-		Sama_1402	0.64	-3.3
1,702,070	-		Sama_1402	0.64	-3.9
1,702,070	-		Sama_1402	0.64	+0.6
1,702,070	-		Sama_1402	0.64	-1.4
1,702,108	+		Sama_1402	0.66	-4.4
1,702,109	-		Sama_1402	0.66	-3.7
1,702,109	-		Sama_1402	0.66	-2.3
1,702,173	+		Sama_1402	0.71	-1.9
1,702,173	+		Sama_1402	0.71	-2.4
1,702,174	-		Sama_1402	0.71	-3.1
1,702,174	-		Sama_1402	0.71	-2.5