Strain Fitness in Shewanella amazonensis SB2B around Sama_0917

Experiment: D-Cellobiose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cellobiose
1,108,937	+		Sama_0916	0.37	-1.4
1,108,937	+		Sama_0916	0.37	-2.1
1,108,937	+		Sama_0916	0.37	-1.1
1,108,937	+		Sama_0916	0.37	-0.9
1,108,937	+		Sama_0916	0.37	-1.7
1,108,937	+		Sama_0916	0.37	-1.1
1,108,937	+		Sama_0916	0.37	-1.5
1,108,937	+		Sama_0916	0.37	-2.7
1,108,937	+		Sama_0916	0.37	-1.7
1,108,937	+		Sama_0916	0.37	-0.3
1,108,938	-		Sama_0916	0.37	-1.4
1,108,938	-		Sama_0916	0.37	-1.7
1,108,938	-		Sama_0916	0.37	-0.5
1,108,938	-		Sama_0916	0.37	-1.7
1,108,938	-		Sama_0916	0.37	-1.9
1,108,938	-		Sama_0916	0.37	-2.8
1,108,938	-		Sama_0916	0.37	-1.5
1,108,938	-		Sama_0916	0.37	-1.4
1,108,938	-		Sama_0916	0.37	-2.3
1,108,938	-		Sama_0916	0.37	+0.3
1,108,938	-		Sama_0916	0.37	-1.3
1,108,938	-		Sama_0916	0.37	-2.8
1,108,953	+		Sama_0916	0.39	-2.1
1,108,993	+		Sama_0916	0.41	-2.7
1,108,994	-		Sama_0916	0.41	-1.5
1,109,007	+		Sama_0916	0.42	+0.2
1,109,029	+		Sama_0916	0.44	-2.1
1,109,079	+		Sama_0916	0.47	-2.4
1,109,079	+		Sama_0916	0.47	-1.0
1,109,079	+		Sama_0916	0.47	-0.5
1,109,079	+		Sama_0916	0.47	-1.1
1,109,080	-		Sama_0916	0.47	-1.9
1,109,083	+		Sama_0916	0.48	-2.3
1,109,083	+		Sama_0916	0.48	-0.9
1,109,083	+		Sama_0916	0.48	-1.2
1,109,083	+		Sama_0916	0.48	-2.3
1,109,097	+		Sama_0916	0.49	-2.8
1,109,113	+		Sama_0916	0.50	-1.7
1,109,113	+		Sama_0916	0.50	-2.2
1,109,113	+		Sama_0916	0.50	-1.7
1,109,113	+		Sama_0916	0.50	-1.2
1,109,113	+		Sama_0916	0.50	-1.1
1,109,113	+		Sama_0916	0.50	+0.9
1,109,113	+		Sama_0916	0.50	-1.7
1,109,114	-		Sama_0916	0.50	-1.4
1,109,159	+		Sama_0916	0.53	-1.3
1,109,159	+		Sama_0916	0.53	-1.6
1,109,159	+		Sama_0916	0.53	+0.9
1,109,159	+		Sama_0916	0.53	-1.7
1,109,159	+		Sama_0916	0.53	-0.3
1,109,159	+		Sama_0916	0.53	-0.1
1,109,159	+		Sama_0916	0.53	-1.8
1,109,160	-		Sama_0916	0.53	-1.0
1,109,160	-		Sama_0916	0.53	-1.9
1,109,160	-		Sama_0916	0.53	-2.3
1,109,188	+		Sama_0916	0.55	-2.6
1,109,188	+		Sama_0916	0.55	-1.0
1,109,241	+		Sama_0916	0.58	-3.3
1,109,242	-		Sama_0916	0.59	-1.0
1,109,242	-		Sama_0916	0.59	-0.4
1,109,350	+		Sama_0916	0.66	+0.6
1,109,389	+		Sama_0916	0.69	+0.3
1,109,392	+		Sama_0916	0.69	-1.2
1,109,392	+		Sama_0916	0.69	-1.2
1,109,424	+		Sama_0916	0.71	-1.7
1,109,424	+		Sama_0916	0.71	-1.1
1,109,424	+		Sama_0916	0.71	-0.5
1,109,424	+		Sama_0916	0.71	-0.7
1,109,425	-		Sama_0916	0.71	-2.3
1,109,425	-		Sama_0916	0.71	-0.7
1,109,425	-		Sama_0916	0.71	+0.3
1,109,476	+		Sama_0916	0.75	-1.3
1,109,476	+		Sama_0916	0.75	-1.0
1,109,476	+		Sama_0916	0.75	-1.3
1,109,476	+		Sama_0916	0.75	-0.1
1,109,477	-		Sama_0916	0.75	-1.7
1,109,482	+		Sama_0916	0.75	-1.1
1,109,482	+		Sama_0916	0.75	-0.7
1,109,482	+		Sama_0916	0.75	-2.1
1,109,482	+		Sama_0916	0.75	-2.1
1,109,482	+		Sama_0916	0.75	-2.1
1,109,483	-		Sama_0916	0.75	+0.7
1,109,483	-		Sama_0916	0.75	-1.5
1,109,485	+		Sama_0916	0.75	-2.6
1,109,491	+		Sama_0916	0.76	-3.0
1,109,491	+		Sama_0916	0.76	-3.0
1,109,492	-		Sama_0916	0.76	-2.8
1,109,495	+		Sama_0916	0.76	-2.3
1,109,495	+		Sama_0916	0.76	-2.3
1,109,495	+		Sama_0916	0.76	-3.3
1,109,495	+		Sama_0916	0.76	-0.4
1,109,495	+		Sama_0916	0.76	-1.0
1,109,495	+		Sama_0916	0.76	-2.0
1,109,496	-		Sama_0916	0.76	-0.1
1,109,496	-		Sama_0916	0.76	+0.5
1,109,496	-		Sama_0916	0.76	-1.1
1,109,496	-		Sama_0916	0.76	-2.7
1,109,501	+		Sama_0916	0.77	-0.4
1,109,566	-		Sama_0916	0.81	-1.3
1,109,596	+		Sama_0916	0.83	-2.6
1,109,596	+		Sama_0916	0.83	+0.1
1,109,597	-		Sama_0916	0.83	-2.0
1,109,662	+		Sama_0916	0.88	-2.3
1,109,662	+		Sama_0916	0.88	-1.8
1,109,662	+		Sama_0916	0.88	-2.0
1,109,662	+		Sama_0916	0.88	-1.3
1,109,662	+		Sama_0916	0.88	-0.7
1,109,662	+		Sama_0916	0.88	-0.9
1,109,665	+		Sama_0916	0.88	-1.4
1,109,665	+		Sama_0916	0.88	-3.1
1,109,665	+		Sama_0916	0.88	-2.4
1,109,676	+		Sama_0916	0.89	-3.6
1,109,676	+		Sama_0916	0.89	-1.4
1,109,677	-		Sama_0916	0.89	-2.7
1,109,679	+		Sama_0916	0.89	-0.1
1,109,761	+				-0.9
1,109,821	+				-0.6
1,109,821	+				+0.1
1,109,821	+				-0.2
1,109,822	-				-1.1
1,109,906	+				+1.9
1,109,906	+				-1.1
1,109,906	+				+0.6
1,109,906	+				-1.1
1,109,907	-				-1.3
1,109,907	-				-0.7
1,109,907	-				+1.7
1,109,913	+				-1.7
1,109,947	+				-0.0
1,109,948	-				+0.3
1,110,000	+				-0.7
1,110,000	+				+0.9
1,110,007	+				-0.8
1,110,007	+				-0.3
1,110,040	+		Sama_0917	0.13	-0.2
1,110,040	+		Sama_0917	0.13	+0.7
1,110,040	+		Sama_0917	0.13	+0.3
1,110,041	-		Sama_0917	0.13	-1.0
1,110,041	-		Sama_0917	0.13	+2.0
1,110,041	-		Sama_0917	0.13	-0.6
1,110,041	-		Sama_0917	0.13	-0.6
1,110,041	-		Sama_0917	0.13	+0.2
1,110,198	+		Sama_0917	0.34	+0.0
1,110,199	-		Sama_0917	0.34	-0.5
1,110,199	-		Sama_0917	0.34	+0.4
1,110,223	+		Sama_0917	0.37	+0.5
1,110,224	-		Sama_0917	0.37	-0.9
1,110,243	+		Sama_0917	0.40	-0.9
1,110,243	+		Sama_0917	0.40	+0.6
1,110,277	+		Sama_0917	0.44	-0.1
1,110,277	+		Sama_0917	0.44	+0.7
1,110,278	-		Sama_0917	0.44	-0.4
1,110,279	+		Sama_0917	0.44	-0.5
1,110,279	+		Sama_0917	0.44	-0.3
1,110,279	+		Sama_0917	0.44	+0.1
1,110,279	+		Sama_0917	0.44	+0.4
1,110,279	+		Sama_0917	0.44	-0.1
1,110,279	+		Sama_0917	0.44	-0.4
1,110,280	-		Sama_0917	0.44	+0.8
1,110,280	-		Sama_0917	0.44	-0.8
1,110,280	-		Sama_0917	0.44	+0.2
1,110,280	-		Sama_0917	0.44	+1.2
1,110,280	-		Sama_0917	0.44	+0.9
1,110,332	+		Sama_0917	0.51	-0.5
1,110,367	-		Sama_0917	0.56	+0.3
1,110,431	+		Sama_0917	0.64	-0.4
1,110,431	+		Sama_0917	0.64	+0.3
1,110,431	+		Sama_0917	0.64	-1.1
1,110,431	+		Sama_0917	0.64	+0.7
1,110,431	+		Sama_0917	0.64	+0.7
1,110,432	-		Sama_0917	0.64	-0.7
1,110,432	-		Sama_0917	0.64	+1.3
1,110,432	-		Sama_0917	0.64	+0.1
1,110,460	-		Sama_0917	0.68	-0.3
1,110,488	+		Sama_0917	0.71	-0.1
1,110,488	+		Sama_0917	0.71	+0.3
1,110,515	+		Sama_0917	0.75	+0.6
1,110,515	+		Sama_0917	0.75	-0.5
1,110,516	-		Sama_0917	0.75	+0.9
1,110,555	+		Sama_0917	0.80	+0.9
1,110,616	+		Sama_0917	0.88	-0.1
1,110,616	+		Sama_0917	0.88	+0.1
1,110,616	+		Sama_0917	0.88	+1.7
1,110,616	+		Sama_0917	0.88	-0.2
1,110,616	+		Sama_0917	0.88	+1.7
1,110,616	+		Sama_0917	0.88	+0.9
1,110,616	+		Sama_0917	0.88	+0.7
1,110,617	-		Sama_0917	0.88	+0.5
1,110,639	+				-0.5
1,110,640	-				+0.5
1,110,640	-				+1.3
1,110,640	-				-0.7
1,110,648	+				+0.2
1,110,649	-				+1.5
1,110,651	+				-0.4
1,110,651	+				+0.2
1,110,651	+				+0.1
1,110,651	+				+2.1
1,110,651	+				+0.9
1,110,651	+				+0.2
1,110,651	+				+0.9
1,110,651	+				-0.3
1,110,651	+				+0.7
1,110,652	-				+0.5
1,110,652	-				-1.4
1,110,652	-				-0.1
1,110,654	+				-1.1
1,110,654	+				-0.1
1,110,654	+				+0.2
1,110,654	+				-0.2
1,110,655	-				-0.7
1,110,655	-				-1.1
1,110,655	-				-0.4
1,110,655	-				+0.1
1,110,655	-				+0.9
1,110,655	-				+0.4
1,110,656	+				-0.7
1,110,656	+				-0.1
1,110,657	-				+0.7
1,110,708	+				+0.0
1,110,834	+				-0.4
1,110,868	+				-0.7
1,110,999	+		Sama_0918	0.28	-1.7
1,111,000	-		Sama_0918	0.28	+0.9
1,111,000	-		Sama_0918	0.28	+2.1
1,111,365	+				+0.9
1,111,381	+				+1.9
1,111,384	+				+0.3
1,111,403	+				+1.2
1,111,403	+				-1.5
1,111,404	-				+0.4
1,111,404	-				+0.3
1,111,469	+				+0.2
1,111,469	+				-0.9
1,111,469	+				-1.4
1,111,470	-				-1.3
1,111,470	-				+1.3
1,111,470	-				-0.7
1,111,470	-				+0.1
1,111,471	+				-0.7
1,111,471	+				+1.2
1,111,471	+				+0.6
1,111,471	+				-0.4
1,111,472	-				+0.3
1,111,472	-				+0.6
1,111,472	-				+0.1
1,111,472	-				+0.6
1,111,472	-				+0.9
1,111,472	-				-1.4
1,111,472	-				+0.2
1,111,472	-				-0.6
1,111,472	-				+0.9
1,111,472	-				+0.5
1,111,472	-				-0.2
1,111,472	-				-0.7
1,111,538	+				+0.5
1,111,538	+				+0.1
1,111,538	+				-0.5
1,111,548	-		Sama_0919	0.10	-0.0
1,111,582	+		Sama_0919	0.13	+0.0
1,111,602	+		Sama_0919	0.14	-0.0
1,111,602	+		Sama_0919	0.14	+0.3
1,111,602	+		Sama_0919	0.14	+1.1
1,111,602	+		Sama_0919	0.14	+0.6
1,111,602	+		Sama_0919	0.14	-0.2
1,111,603	-		Sama_0919	0.14	-0.1
1,111,603	-		Sama_0919	0.14	-0.1
1,111,603	-		Sama_0919	0.14	-0.5
1,111,603	-		Sama_0919	0.14	-0.1
1,111,603	-		Sama_0919	0.14	-0.7
1,111,603	-		Sama_0919	0.14	-0.7
1,111,632	+		Sama_0919	0.16	+1.2
1,111,633	-		Sama_0919	0.16	+1.3
1,111,663	+		Sama_0919	0.19	+0.3
1,111,663	+		Sama_0919	0.19	+0.7
1,111,663	+		Sama_0919	0.19	-0.5
1,111,664	-		Sama_0919	0.19	-0.3
1,111,664	-		Sama_0919	0.19	+0.8
1,111,664	-		Sama_0919	0.19	+0.8