Strain Fitness in Shewanella amazonensis SB2B around Sama_3472

Experiment: LB rep1 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t1
4,100,598	-				-0.0
4,100,615	-		Sama_3471	0.11	+0.8
4,100,636	+		Sama_3471	0.15	+0.0
4,100,636	+		Sama_3471	0.15	-0.2
4,100,636	+		Sama_3471	0.15	+0.1
4,100,636	+		Sama_3471	0.15	-0.8
4,100,637	-		Sama_3471	0.15	+0.7
4,100,637	-		Sama_3471	0.15	+0.8
4,100,687	-		Sama_3471	0.24	-0.0
4,100,691	-		Sama_3471	0.24	+0.3
4,100,691	-		Sama_3471	0.24	-0.1
4,100,691	-		Sama_3471	0.24	-0.6
4,100,737	+		Sama_3471	0.33	-0.2
4,100,737	+		Sama_3471	0.33	+1.4
4,100,737	+		Sama_3471	0.33	+1.4
4,100,737	+		Sama_3471	0.33	-0.8
4,100,737	+		Sama_3471	0.33	+0.5
4,100,738	-		Sama_3471	0.33	+1.0
4,100,738	-		Sama_3471	0.33	-1.4
4,100,738	-		Sama_3471	0.33	-2.8
4,100,738	-		Sama_3471	0.33	+0.2
4,100,765	+		Sama_3471	0.38	+0.2
4,100,835	+		Sama_3471	0.50	+1.4
4,100,835	+		Sama_3471	0.50	+0.5
4,100,836	-		Sama_3471	0.50	+0.1
4,100,836	-		Sama_3471	0.50	+1.2
4,100,854	-		Sama_3471	0.53	+0.0
4,100,857	+		Sama_3471	0.54	+0.7
4,100,858	-		Sama_3471	0.54	+0.8
4,100,906	+		Sama_3471	0.63	+0.8
4,100,916	-		Sama_3471	0.64	+0.1
4,100,916	-		Sama_3471	0.64	-0.2
4,100,941	-		Sama_3471	0.69	+0.4
4,100,941	-		Sama_3471	0.69	+1.5
4,100,941	-		Sama_3471	0.69	-0.2
4,100,978	+		Sama_3471	0.75	+0.6
4,100,979	-		Sama_3471	0.76	-0.1
4,100,979	-		Sama_3471	0.76	-0.7
4,100,993	+		Sama_3471	0.78	+0.8
4,100,994	-		Sama_3471	0.78	+0.0
4,101,002	+		Sama_3471	0.80	-0.2
4,101,002	+		Sama_3471	0.80	+0.8
4,101,002	+		Sama_3471	0.80	+0.0
4,101,002	+		Sama_3471	0.80	+0.0
4,101,002	+		Sama_3471	0.80	+0.4
4,101,003	-		Sama_3471	0.80	-0.9
4,101,003	-		Sama_3471	0.80	+0.2
4,101,003	-		Sama_3471	0.80	+0.5
4,101,003	-		Sama_3471	0.80	-0.8
4,101,003	-		Sama_3471	0.80	+0.3
4,101,003	-		Sama_3471	0.80	+0.8
4,101,055	-		Sama_3471	0.89	+0.8
4,101,055	-		Sama_3471	0.89	-0.7
4,101,073	-				-0.0
4,101,073	-				-0.5
4,101,073	-				+0.3
4,101,073	-				-0.2
4,101,073	-				+0.8
4,101,099	+				+0.8
4,101,100	-				-0.2
4,101,122	+				+0.1
4,101,123	-				-0.4
4,101,123	-				+0.4
4,101,123	-				-0.2
4,101,143	+				+0.1
4,101,152	-				+0.4
4,101,154	+				-1.6
4,101,155	-				-0.6
4,101,162	+				-0.2
4,101,162	+				+0.4
4,101,163	-				+0.3
4,101,163	-				-1.2
4,101,163	-				-0.0
4,101,163	-				-0.5
4,101,165	+				+0.8
4,101,165	+				-0.2
4,101,165	+				+0.1
4,101,166	-				-0.8
4,101,166	-				+1.6
4,101,166	-				-0.3
4,101,166	-				+1.3
4,101,166	-				+0.6
4,101,170	+				-0.2
4,101,197	-				-0.0
4,101,209	-				-1.0
4,101,209	-				-0.5
4,101,210	+				+0.5
4,101,217	+				+0.0
4,101,218	-				+1.8
4,101,260	+				-0.8
4,101,261	-				+0.3
4,101,261	-				+1.5
4,101,293	+				-0.4
4,101,293	+				-0.4
4,101,294	-				-0.5
4,101,294	-				-0.3
4,101,301	+				-0.4
4,101,302	-				+0.6
4,101,306	+				-0.2
4,101,306	+				+0.7
4,101,306	+				+0.8
4,101,307	-				-0.9
4,101,307	-				-0.9
4,101,307	-				+0.4
4,101,307	-				-0.5
4,101,307	-				-1.0
4,101,346	+				+1.0
4,101,346	+				+1.1
4,101,346	+				-0.2
4,101,346	+				-0.2
4,101,347	-				+0.8
4,101,347	-				-0.7
4,101,347	-				+0.1
4,101,347	-				-0.9
4,101,347	-				+0.1
4,101,347	-				+0.3
4,101,363	+				+0.2
4,101,363	+				+0.2
4,101,363	+				+1.0
4,101,364	-				+0.0
4,101,379	-				-1.0
4,101,379	-				-0.2
4,101,391	-				-0.1
4,101,448	-				+0.6
4,101,510	+				-0.4
4,101,510	+				-0.3
4,101,511	-				+1.4
4,101,511	-				+1.7
4,101,511	-				-0.7
4,101,511	-				-0.9
4,101,529	-				-0.3
4,101,545	+				+0.8
4,101,546	-				+0.7
4,101,559	+				+0.7
4,101,559	+				+0.2
4,101,559	+				-0.2
4,101,559	+				+1.4
4,101,559	+				+0.6
4,101,559	+				+0.5
4,101,560	-				-0.5
4,101,560	-				+1.2
4,101,577	+				-1.2
4,101,578	-				-0.4
4,101,578	-				+0.8
4,101,578	-				-0.2
4,101,591	+				+0.0
4,101,591	+				-0.6
4,101,591	+				-0.6
4,101,591	+				-0.8
4,101,591	+				+1.8
4,101,591	+				-0.2
4,101,591	+				+0.0
4,101,592	-				+0.5
4,101,592	-				-0.8
4,101,592	-				+0.8
4,101,592	-				+1.0
4,101,592	-				+0.0
4,101,592	-				-0.0
4,101,592	-				+1.4
4,101,592	-				-0.4
4,101,592	-				+0.8
4,101,592	-				-1.2
4,101,592	-				-0.0
4,101,609	+				+0.7
4,101,630	+				+0.8
4,101,630	+				+0.9
4,101,630	+				-1.0
4,101,683	+		Sama_3472	0.20	+1.1
4,101,683	+		Sama_3472	0.20	+0.6
4,101,684	-		Sama_3472	0.20	+0.5
4,101,684	-		Sama_3472	0.20	-0.6
4,101,684	-		Sama_3472	0.20	+0.6
4,101,684	-		Sama_3472	0.20	+0.5
4,101,708	+		Sama_3472	0.26	+0.4
4,101,708	+		Sama_3472	0.26	-0.3
4,101,708	+		Sama_3472	0.26	-0.5
4,101,708	+		Sama_3472	0.26	+0.1
4,101,709	-		Sama_3472	0.26	-0.0
4,101,709	-		Sama_3472	0.26	+0.6
4,101,826	-		Sama_3472	0.52	+0.3
4,101,826	-		Sama_3472	0.52	-0.4
4,101,864	+		Sama_3472	0.60	+1.2
4,101,865	-		Sama_3472	0.61	-0.9
4,101,865	-		Sama_3472	0.61	+0.2
4,101,913	+		Sama_3472	0.71	+0.2
4,101,913	+		Sama_3472	0.71	+0.2
4,101,914	-		Sama_3472	0.72	+0.8
4,101,914	-		Sama_3472	0.72	+0.5
4,101,914	-		Sama_3472	0.72	+0.5
4,102,026	-				+1.8
4,102,026	-				-1.2
4,102,044	-				+1.0
4,102,044	-				+0.4
4,102,044	-				+0.3
4,102,045	+				+1.6
4,102,045	+				+1.2
4,102,045	+				+0.8
4,102,045	+				-0.7
4,102,045	+				-0.4
4,102,045	+				+0.3
4,102,046	-				-0.3
4,102,046	-				-0.2
4,102,046	-				+0.4
4,102,046	-				+1.4
4,102,091	+				+0.8
4,102,091	+				-0.5
4,102,091	+				+0.8
4,102,091	+				+0.5
4,102,091	+				+0.1
4,102,091	+				+1.3
4,102,092	-				-0.2
4,102,092	-				+0.8
4,102,092	-				+1.6
4,102,092	-				-0.2
4,102,092	-				+0.1
4,102,092	-				+0.0
4,102,092	-				+0.6
4,102,092	-				-1.2
4,102,097	+				+1.0
4,102,098	-				+0.5
4,102,098	-				+0.0
4,102,098	-				+0.5
4,102,135	+		Sama_3473	0.11	+1.4
4,102,135	+		Sama_3473	0.11	+1.0
4,102,136	-		Sama_3473	0.11	+0.1
4,102,136	-		Sama_3473	0.11	-0.4
4,102,301	+		Sama_3473	0.58	-0.1
4,102,301	+		Sama_3473	0.58	-0.5
4,102,316	+		Sama_3473	0.62	+0.0
4,102,316	+		Sama_3473	0.62	+0.4
4,102,316	+		Sama_3473	0.62	+0.5
4,102,316	+		Sama_3473	0.62	+0.1
4,102,316	+		Sama_3473	0.62	+0.6
4,102,317	-		Sama_3473	0.62	+0.2
4,102,317	-		Sama_3473	0.62	-0.2
4,102,418	+				-0.3
4,102,418	+				-2.5
4,102,434	+				+0.2
4,102,473	+				+0.9
4,102,473	+				+0.1
4,102,473	+				+0.8
4,102,474	-				+0.3
4,102,474	-				+0.6
4,102,474	-				-0.2
4,102,474	-				-1.2
4,102,476	+				+0.1
4,102,476	+				+1.1
4,102,476	+				+0.8
4,102,476	+				-0.6
4,102,476	+				+0.5
4,102,477	-				-0.5
4,102,477	-				+0.1
4,102,477	-				+1.1
4,102,477	-				-0.2
4,102,477	-				-0.2
4,102,477	-				-0.4
4,102,477	-				+0.3
4,102,477	-				+0.1
4,102,477	-				-1.8
4,102,477	-				-0.8
4,102,477	-				+0.2
4,102,556	+				+0.3
4,102,556	+				-1.2
4,102,556	+				+0.3
4,102,556	+				+0.3
4,102,556	+				+0.6
4,102,556	+				+0.3
4,102,557	-				+0.4
4,102,557	-				-0.8
4,102,612	+				+1.7
4,102,612	+				+1.0
4,102,613	-				-1.0
4,102,637	+		Sama_3474	0.10	-0.8
4,102,638	-		Sama_3474	0.10	-0.6
4,102,744	+		Sama_3474	0.17	+0.3
4,102,744	+		Sama_3474	0.17	+0.9
4,102,744	+		Sama_3474	0.17	-0.0
4,102,745	-		Sama_3474	0.17	+0.2
4,102,745	-		Sama_3474	0.17	+0.8
4,102,745	-		Sama_3474	0.17	-0.3
4,102,745	-		Sama_3474	0.17	+0.8
4,102,745	-		Sama_3474	0.17	+1.4
4,102,745	-		Sama_3474	0.17	+0.3
4,102,745	-		Sama_3474	0.17	-0.4
4,102,745	-		Sama_3474	0.17	+0.2
4,102,745	-		Sama_3474	0.17	-0.6
4,102,745	-		Sama_3474	0.17	+1.0
4,102,746	+		Sama_3474	0.17	+0.1
4,102,746	+		Sama_3474	0.17	+1.0
4,102,746	+		Sama_3474	0.17	-0.8
4,102,746	+		Sama_3474	0.17	+0.1
4,102,746	+		Sama_3474	0.17	-0.4
4,102,746	+		Sama_3474	0.17	+0.4
4,102,747	-		Sama_3474	0.17	+0.0
4,102,747	-		Sama_3474	0.17	-0.0
4,102,860	+		Sama_3474	0.24	-0.4
4,102,860	+		Sama_3474	0.24	-0.2
4,102,860	+		Sama_3474	0.24	+0.2
4,102,861	-		Sama_3474	0.24	+0.7
4,102,861	-		Sama_3474	0.24	+0.4
4,102,861	-		Sama_3474	0.24	+1.4
4,102,905	+		Sama_3474	0.27	-0.4
4,102,906	-		Sama_3474	0.27	-0.8
4,102,954	+		Sama_3474	0.30	+0.2
4,102,954	+		Sama_3474	0.30	+0.4
4,102,954	+		Sama_3474	0.30	+0.1
4,102,954	+		Sama_3474	0.30	-0.2
4,102,954	+		Sama_3474	0.30	+0.5
4,102,954	+		Sama_3474	0.30	+0.4
4,102,954	+		Sama_3474	0.30	-0.6
4,102,954	+		Sama_3474	0.30	-0.0
4,102,954	+		Sama_3474	0.30	-0.8
4,102,954	+		Sama_3474	0.30	+0.4
4,102,954	+		Sama_3474	0.30	-0.6
4,102,954	+		Sama_3474	0.30	-1.8
4,102,954	+		Sama_3474	0.30	+1.8
4,102,954	+		Sama_3474	0.30	-0.2
4,102,954	+		Sama_3474	0.30	-0.2
4,102,955	-		Sama_3474	0.30	+0.5
4,102,955	-		Sama_3474	0.30	-0.2
4,102,955	-		Sama_3474	0.30	-0.0
4,102,955	-		Sama_3474	0.30	+1.3
4,102,955	-		Sama_3474	0.30	-0.2
4,102,955	-		Sama_3474	0.30	+0.4
4,102,955	-		Sama_3474	0.30	-0.5
4,102,955	-		Sama_3474	0.30	+0.6
4,102,955	-		Sama_3474	0.30	-0.2
4,102,955	-		Sama_3474	0.30	-0.3
4,102,955	-		Sama_3474	0.30	+0.2
4,102,955	-		Sama_3474	0.30	+0.7
4,102,955	-		Sama_3474	0.30	+0.1
4,102,977	+		Sama_3474	0.32	-0.2
4,102,978	-		Sama_3474	0.32	-3.5
4,102,978	-		Sama_3474	0.32	+0.2
4,102,978	-		Sama_3474	0.32	+0.4
4,103,033	+		Sama_3474	0.35	+0.8
4,103,033	+		Sama_3474	0.35	-0.4
4,103,033	+		Sama_3474	0.35	-1.3
4,103,033	+		Sama_3474	0.35	+0.8
4,103,033	+		Sama_3474	0.35	+0.8
4,103,034	-		Sama_3474	0.35	+0.4
4,103,034	-		Sama_3474	0.35	-0.4
4,103,034	-		Sama_3474	0.35	-0.4
4,103,034	-		Sama_3474	0.35	+0.8