Strain Fitness in Shewanella amazonensis SB2B around Sama_2553

Experiment: LB rep1 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t1
3,060,707	+				+0.2
3,060,708	-				-2.5
3,060,708	-				-0.0
3,060,734	-				+0.6
3,060,738	+				+0.0
3,060,759	+				+0.1
3,060,836	+				+0.4
3,060,837	-				+1.1
3,060,854	+				+0.4
3,060,855	-				-0.5
3,060,894	+				+0.4
3,060,895	-				+1.2
3,060,895	-				-0.2
3,060,895	-				+0.9
3,060,898	-				-1.0
3,060,898	-				-0.4
3,060,898	-				-0.5
3,060,898	-				-0.2
3,060,901	-				+0.6
3,060,933	-		Sama_2552	0.11	+2.8
3,060,933	-		Sama_2552	0.11	+0.4
3,060,933	-		Sama_2552	0.11	+0.4
3,060,933	-		Sama_2552	0.11	-0.4
3,060,939	-		Sama_2552	0.12	-0.5
3,061,018	-		Sama_2552	0.26	-0.1
3,061,018	-		Sama_2552	0.26	+1.4
3,061,040	+		Sama_2552	0.30	+0.5
3,061,040	+		Sama_2552	0.30	-1.4
3,061,040	+		Sama_2552	0.30	+0.8
3,061,041	-		Sama_2552	0.30	-0.4
3,061,041	-		Sama_2552	0.30	-0.8
3,061,041	-		Sama_2552	0.30	+0.0
3,061,041	-		Sama_2552	0.30	+0.8
3,061,041	-		Sama_2552	0.30	+0.8
3,061,041	-		Sama_2552	0.30	+1.8
3,061,041	-		Sama_2552	0.30	+0.0
3,061,041	-		Sama_2552	0.30	+0.3
3,061,041	-		Sama_2552	0.30	+0.0
3,061,041	-		Sama_2552	0.30	+1.4
3,061,041	-		Sama_2552	0.30	-0.1
3,061,041	-		Sama_2552	0.30	-0.2
3,061,048	-		Sama_2552	0.32	-0.1
3,061,077	-		Sama_2552	0.37	-0.2
3,061,103	+		Sama_2552	0.41	+1.1
3,061,104	-		Sama_2552	0.42	+0.4
3,061,128	-		Sama_2552	0.46	+0.8
3,061,136	+		Sama_2552	0.47	+0.2
3,061,163	-		Sama_2552	0.52	+0.2
3,061,163	-		Sama_2552	0.52	+0.4
3,061,164	+		Sama_2552	0.52	+1.1
3,061,165	-		Sama_2552	0.52	+0.8
3,061,182	-		Sama_2552	0.55	+0.2
3,061,182	-		Sama_2552	0.55	+0.6
3,061,182	-		Sama_2552	0.55	-0.9
3,061,205	+		Sama_2552	0.60	+1.8
3,061,206	-		Sama_2552	0.60	+0.4
3,061,206	-		Sama_2552	0.60	-0.2
3,061,206	-		Sama_2552	0.60	+0.5
3,061,206	-		Sama_2552	0.60	+0.2
3,061,241	+		Sama_2552	0.66	-0.2
3,061,241	+		Sama_2552	0.66	-0.5
3,061,241	+		Sama_2552	0.66	-0.4
3,061,241	+		Sama_2552	0.66	+0.4
3,061,241	+		Sama_2552	0.66	-0.1
3,061,242	-		Sama_2552	0.66	+0.4
3,061,242	-		Sama_2552	0.66	+0.8
3,061,242	-		Sama_2552	0.66	-0.4
3,061,242	-		Sama_2552	0.66	-0.0
3,061,242	-		Sama_2552	0.66	+0.9
3,061,242	-		Sama_2552	0.66	-0.2
3,061,242	-		Sama_2552	0.66	+0.5
3,061,242	-		Sama_2552	0.66	+1.4
3,061,242	-		Sama_2552	0.66	-1.2
3,061,242	-		Sama_2552	0.66	+0.4
3,061,242	-		Sama_2552	0.66	-0.8
3,061,260	-		Sama_2552	0.69	+0.2
3,061,260	-		Sama_2552	0.69	+0.0
3,061,307	+		Sama_2552	0.78	-0.6
3,061,333	+		Sama_2552	0.82	+0.3
3,061,345	-		Sama_2552	0.84	+0.9
3,061,345	-		Sama_2552	0.84	+0.5
3,061,345	-		Sama_2552	0.84	-0.4
3,061,366	+		Sama_2552	0.88	-2.8
3,061,366	+		Sama_2552	0.88	+1.4
3,061,366	+		Sama_2552	0.88	-0.7
3,061,367	-		Sama_2552	0.88	+0.4
3,061,367	-		Sama_2552	0.88	+0.5
3,061,401	+				-0.2
3,061,408	+				+0.4
3,061,409	-				-0.8
3,061,409	-				-0.7
3,061,409	-				+0.5
3,061,415	-				+1.0
3,061,415	-				+1.2
3,061,423	+				-0.8
3,061,424	-				+1.4
3,061,424	-				-0.2
3,061,442	-				+0.3
3,061,537	+				+1.1
3,061,537	+				-0.1
3,061,643	+		Sama_2553	0.20	-1.2
3,061,643	+		Sama_2553	0.20	+0.3
3,061,644	-		Sama_2553	0.20	-0.2
3,061,644	-		Sama_2553	0.20	+0.0
3,061,666	-		Sama_2553	0.24	+0.5
3,061,675	+		Sama_2553	0.25	-0.8
3,061,697	-		Sama_2553	0.29	+2.4
3,061,697	-		Sama_2553	0.29	+1.4
3,061,798	+		Sama_2553	0.45	+2.0
3,061,799	-		Sama_2553	0.45	-0.2
3,061,837	+		Sama_2553	0.52	+0.5
3,061,870	+		Sama_2553	0.57	-1.1
3,061,871	-		Sama_2553	0.57	+0.4
3,061,896	+		Sama_2553	0.61	-0.2
3,061,896	+		Sama_2553	0.61	+1.5
3,061,897	-		Sama_2553	0.61	+0.8
3,061,961	+		Sama_2553	0.72	-0.6
3,061,962	-		Sama_2553	0.72	+0.8
3,061,962	-		Sama_2553	0.72	+2.6
3,061,997	+		Sama_2553	0.78	+0.8
3,062,044	+		Sama_2553	0.85	+1.0
3,062,045	-		Sama_2553	0.85	+0.4
3,062,065	+		Sama_2553	0.89	+0.3
3,062,065	+		Sama_2553	0.89	+1.4
3,062,065	+		Sama_2553	0.89	+1.2
3,062,066	-		Sama_2553	0.89	-0.8
3,062,066	-		Sama_2553	0.89	-0.8
3,062,066	-		Sama_2553	0.89	-0.2
3,062,066	-		Sama_2553	0.89	+1.1
3,062,094	+				+0.1
3,062,094	+				+1.1
3,062,094	+				-0.8
3,062,095	-				+0.8
3,062,095	-				-3.0
3,062,132	+				-0.6
3,062,133	-				-0.2
3,062,153	+				+1.2
3,062,153	+				-1.2
3,062,153	+				+0.8
3,062,153	+				+0.5
3,062,194	+				+0.4
3,062,195	-				+2.1
3,062,311	+		Sama_2554	0.26	+2.6
3,062,312	-		Sama_2554	0.27	-1.2
3,062,333	+		Sama_2554	0.30	+0.5
3,062,333	+		Sama_2554	0.30	+0.2
3,062,333	+		Sama_2554	0.30	-0.1
3,062,333	+		Sama_2554	0.30	-0.6
3,062,333	+		Sama_2554	0.30	-2.1
3,062,333	+		Sama_2554	0.30	-0.2
3,062,333	+		Sama_2554	0.30	+0.2
3,062,333	+		Sama_2554	0.30	-1.8
3,062,334	-		Sama_2554	0.30	+0.1
3,062,334	-		Sama_2554	0.30	+0.1
3,062,334	-		Sama_2554	0.30	+0.0
3,062,351	+		Sama_2554	0.33	+0.8
3,062,351	+		Sama_2554	0.33	-0.5
3,062,352	-		Sama_2554	0.33	+1.0
3,062,362	+		Sama_2554	0.35	-0.4
3,062,362	+		Sama_2554	0.35	-0.2
3,062,362	+		Sama_2554	0.35	+1.1
3,062,363	-		Sama_2554	0.35	-0.2
3,062,363	-		Sama_2554	0.35	+1.0
3,062,363	-		Sama_2554	0.35	+0.5
3,062,378	-		Sama_2554	0.38	-0.2
3,062,411	-		Sama_2554	0.43	+1.0
3,062,411	-		Sama_2554	0.43	-0.6
3,062,540	+		Sama_2554	0.65	+0.8
3,062,557	+		Sama_2554	0.68	-1.0
3,062,558	-		Sama_2554	0.68	-0.4
3,062,558	-		Sama_2554	0.68	+0.4
3,062,558	-		Sama_2554	0.68	+0.1
3,062,558	-		Sama_2554	0.68	-0.5
3,062,558	-		Sama_2554	0.68	-0.2
3,062,560	+		Sama_2554	0.69	+0.2
3,062,560	+		Sama_2554	0.69	+1.1
3,062,560	+		Sama_2554	0.69	-0.5
3,062,560	+		Sama_2554	0.69	-0.2
3,062,561	-		Sama_2554	0.69	+0.4
3,062,561	-		Sama_2554	0.69	+1.0
3,062,594	+		Sama_2554	0.74	+0.0
3,062,642	-		Sama_2554	0.83	+0.2
3,062,698	+				-0.2
3,062,741	+				-0.3
3,062,777	-				-0.8
3,062,778	+				+1.8
3,062,778	+				+1.4
3,062,778	+				+0.4
3,062,778	+				+0.2
3,062,778	+				+1.0
3,062,779	-				-0.6
3,062,779	-				-0.2
3,062,790	+				-0.2
3,062,790	+				-0.5
3,062,791	-				+0.1
3,062,791	-				+0.5
3,062,858	-		Sama_2555	0.15	+1.0
3,062,858	-		Sama_2555	0.15	+0.7
3,062,908	+		Sama_2555	0.30	+0.1
3,062,909	-		Sama_2555	0.31	-1.5
3,062,909	-		Sama_2555	0.31	+0.8
3,062,912	+		Sama_2555	0.31	+0.3
3,062,912	+		Sama_2555	0.31	+1.4
3,062,912	+		Sama_2555	0.31	+0.1
3,062,912	+		Sama_2555	0.31	+0.1
3,062,912	+		Sama_2555	0.31	+0.2
3,062,919	+		Sama_2555	0.34	-0.8
3,063,076	+		Sama_2555	0.82	-0.8
3,063,076	+		Sama_2555	0.82	+0.7
3,063,077	-		Sama_2555	0.82	+0.1
3,063,077	-		Sama_2555	0.82	-1.2
3,063,081	+		Sama_2555	0.83	-0.2
3,063,081	+		Sama_2555	0.83	+0.9
3,063,081	+		Sama_2555	0.83	-0.2
3,063,081	+		Sama_2555	0.83	+0.6
3,063,081	+		Sama_2555	0.83	-0.2
3,063,081	+		Sama_2555	0.83	+0.3
3,063,082	-		Sama_2555	0.83	+0.0
3,063,082	-		Sama_2555	0.83	-1.0
3,063,082	-		Sama_2555	0.83	-1.6
3,063,086	+		Sama_2555	0.85	+0.4
3,063,086	+		Sama_2555	0.85	+0.6
3,063,086	+		Sama_2555	0.85	-0.8
3,063,087	-		Sama_2555	0.85	+1.1