Strain Fitness in Shewanella amazonensis SB2B around Sama_2530

Experiment: LB rep1 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t1
3,039,079	+		Sama_2528	0.84	-0.2
3,039,080	-		Sama_2528	0.84	-2.2
3,039,080	-		Sama_2528	0.84	-0.8
3,039,087	+		Sama_2528	0.85	-0.2
3,039,087	+		Sama_2528	0.85	+0.1
3,039,087	+		Sama_2528	0.85	-0.8
3,039,087	+		Sama_2528	0.85	-0.5
3,039,087	+		Sama_2528	0.85	-0.2
3,039,088	-		Sama_2528	0.85	+2.1
3,039,088	-		Sama_2528	0.85	+0.8
3,039,097	+		Sama_2528	0.85	+0.5
3,039,136	+		Sama_2528	0.87	+0.4
3,039,137	-		Sama_2528	0.87	-0.2
3,039,143	+		Sama_2528	0.88	-0.4
3,039,197	+				+1.0
3,039,197	+				-0.2
3,039,198	-				-0.2
3,039,198	-				-0.2
3,039,208	+				+0.4
3,039,209	-				+1.6
3,039,209	-				+0.1
3,039,266	+				+1.4
3,039,267	-				+0.8
3,039,267	-				-1.6
3,039,267	-				-0.7
3,039,267	-				-0.1
3,039,325	-				+1.5
3,039,351	+				-0.0
3,039,352	-				+0.2
3,039,361	-				-0.6
3,039,380	+				+2.1
3,039,380	+				+0.2
3,039,380	+				-0.6
3,039,380	+				+1.2
3,039,380	+				-1.0
3,039,380	+				+0.8
3,039,381	-				+0.8
3,039,381	-				-1.8
3,039,381	-				-0.6
3,039,381	-				+0.2
3,039,381	-				-0.6
3,039,409	+				+0.7
3,039,409	+				+0.2
3,039,409	+				+2.1
3,039,409	+				+0.5
3,039,410	-				-0.1
3,039,440	+				-2.7
3,039,440	+				+0.7
3,039,441	-				-0.4
3,039,449	+				+0.8
3,039,461	-				-0.9
3,039,491	+				+1.0
3,039,534	+				+0.4
3,039,534	+				-2.2
3,039,550	+				+0.8
3,039,550	+				+0.4
3,039,551	-				+0.2
3,039,553	-				+1.1
3,039,572	+				+0.8
3,039,576	+				-0.9
3,039,576	+				+1.8
3,039,577	-				+0.8
3,039,577	-				+0.4
3,039,577	-				-0.2
3,039,577	-				-0.3
3,039,577	-				-0.2
3,039,577	-				-0.2
3,039,577	-				-0.6
3,039,580	+				+0.9
3,039,580	+				-0.1
3,039,580	+				+1.8
3,039,607	+				-0.6
3,039,630	+				-0.0
3,039,631	-				-0.8
3,039,658	+		Sama_2529	0.15	-0.4
3,039,659	-		Sama_2529	0.16	-1.2
3,039,715	+		Sama_2529	0.28	-1.3
3,039,715	+		Sama_2529	0.28	-0.0
3,039,716	-		Sama_2529	0.28	-0.0
3,039,716	-		Sama_2529	0.28	+1.8
3,039,716	-		Sama_2529	0.28	+0.3
3,039,744	-		Sama_2529	0.34	+1.4
3,039,772	+		Sama_2529	0.40	-0.6
3,039,772	+		Sama_2529	0.40	-0.6
3,039,772	+		Sama_2529	0.40	-0.0
3,039,772	+		Sama_2529	0.40	-0.9
3,039,772	+		Sama_2529	0.40	+1.5
3,039,772	+		Sama_2529	0.40	+1.5
3,039,772	+		Sama_2529	0.40	+0.8
3,039,772	+		Sama_2529	0.40	-1.2
3,039,772	+		Sama_2529	0.40	-0.5
3,039,772	+		Sama_2529	0.40	+0.7
3,039,773	-		Sama_2529	0.40	+0.1
3,039,773	-		Sama_2529	0.40	+0.4
3,039,773	-		Sama_2529	0.40	-0.2
3,039,773	-		Sama_2529	0.40	-1.2
3,039,773	-		Sama_2529	0.40	+0.2
3,039,773	-		Sama_2529	0.40	+0.3
3,039,778	+		Sama_2529	0.41	+0.5
3,039,815	+		Sama_2529	0.49	-0.8
3,039,815	+		Sama_2529	0.49	-0.2
3,039,815	+		Sama_2529	0.49	-0.2
3,039,816	-		Sama_2529	0.49	-0.0
3,039,816	-		Sama_2529	0.49	+0.8
3,039,819	+		Sama_2529	0.50	-0.0
3,039,819	+		Sama_2529	0.50	-0.1
3,039,819	+		Sama_2529	0.50	-0.2
3,039,819	+		Sama_2529	0.50	+1.1
3,039,819	+		Sama_2529	0.50	+3.2
3,039,819	+		Sama_2529	0.50	+0.0
3,039,819	+		Sama_2529	0.50	-0.2
3,039,819	+		Sama_2529	0.50	+0.2
3,039,819	+		Sama_2529	0.50	-0.2
3,039,819	+		Sama_2529	0.50	-1.2
3,039,819	+		Sama_2529	0.50	+1.1
3,039,820	-		Sama_2529	0.50	-0.2
3,039,820	-		Sama_2529	0.50	-0.6
3,039,820	-		Sama_2529	0.50	+0.6
3,039,820	-		Sama_2529	0.50	-0.1
3,039,820	-		Sama_2529	0.50	-0.6
3,039,820	-		Sama_2529	0.50	-0.1
3,039,820	-		Sama_2529	0.50	+1.4
3,039,854	+		Sama_2529	0.57	-2.2
3,039,855	-		Sama_2529	0.57	-0.2
3,039,855	-		Sama_2529	0.57	+0.1
3,039,872	+		Sama_2529	0.61	+0.4
3,039,873	-		Sama_2529	0.61	+1.0
3,039,873	-		Sama_2529	0.61	-0.6
3,039,873	-		Sama_2529	0.61	+0.4
3,039,873	-		Sama_2529	0.61	-1.2
3,039,873	-		Sama_2529	0.61	+1.6
3,039,873	-		Sama_2529	0.61	-1.2
3,039,873	-		Sama_2529	0.61	-0.5
3,039,961	+		Sama_2529	0.80	-0.1
3,039,961	+		Sama_2529	0.80	-0.4
3,039,982	+		Sama_2529	0.84	-0.2
3,040,032	+				+0.4
3,040,032	+				+1.6
3,040,033	-				-0.1
3,040,033	-				-1.2
3,040,033	-				-0.9
3,040,092	+				+1.0
3,040,092	+				-1.2
3,040,092	+				+0.3
3,040,093	-				+0.7
3,040,093	-				+0.0
3,040,117	+		Sama_2530	0.11	+1.6
3,040,118	-		Sama_2530	0.11	+0.6
3,040,193	+		Sama_2530	0.27	-0.8
3,040,193	+		Sama_2530	0.27	-1.6
3,040,194	-		Sama_2530	0.27	+0.7
3,040,194	-		Sama_2530	0.27	-1.2
3,040,194	-		Sama_2530	0.27	+1.8
3,040,194	-		Sama_2530	0.27	-0.2
3,040,197	+		Sama_2530	0.28	+0.2
3,040,197	+		Sama_2530	0.28	+0.8
3,040,197	+		Sama_2530	0.28	+1.6
3,040,198	-		Sama_2530	0.28	+0.4
3,040,198	-		Sama_2530	0.28	-0.2
3,040,198	-		Sama_2530	0.28	-0.4
3,040,404	+		Sama_2530	0.72	-0.2
3,040,480	+		Sama_2530	0.88	+0.8
3,040,481	-		Sama_2530	0.88	+0.7
3,040,481	-		Sama_2530	0.88	-0.8
3,040,496	+				-0.1
3,040,497	-				+1.1
3,040,514	+				-1.2
3,040,514	+				-0.8
3,040,514	+				-0.2
3,040,515	-				-0.5
3,040,515	-				-0.8
3,040,515	-				-0.0
3,040,515	-				-0.2
3,040,537	+				+0.6
3,040,572	-				-0.6
3,040,572	-				-0.6
3,040,592	-				+0.0
3,040,592	-				+0.9
3,040,592	-				+1.4
3,040,592	-				+0.8
3,040,592	-				+0.0
3,040,592	-				-0.2
3,040,622	+				-0.2
3,040,625	+				-1.0
3,040,625	+				+1.4
3,040,626	-				-0.6
3,040,626	-				+0.8
3,040,688	-				-0.4
3,040,698	+				+1.4
3,040,698	+				-1.0
3,040,698	+				+0.4
3,040,698	+				-0.3
3,040,699	-				-1.1
3,040,699	-				-0.3
3,040,753	+				+0.1
3,040,754	-				-0.2
3,040,754	-				-0.2
3,040,792	+		Sama_2531	0.11	-0.2
3,040,793	-		Sama_2531	0.11	-0.2
3,040,833	-		Sama_2531	0.15	+0.1
3,040,833	-		Sama_2531	0.15	-0.2
3,040,863	-		Sama_2531	0.18	+0.5
3,040,922	+		Sama_2531	0.25	-1.6
3,040,922	+		Sama_2531	0.25	+0.9
3,040,931	+		Sama_2531	0.26	-0.8
3,040,931	+		Sama_2531	0.26	-0.8
3,040,931	+		Sama_2531	0.26	+0.8
3,040,931	+		Sama_2531	0.26	+0.9
3,040,931	+		Sama_2531	0.26	-0.6
3,040,932	-		Sama_2531	0.26	+0.4
3,040,932	-		Sama_2531	0.26	+0.0
3,040,932	-		Sama_2531	0.26	+0.1
3,040,932	-		Sama_2531	0.26	+0.4
3,040,998	+		Sama_2531	0.33	+0.1
3,040,999	-		Sama_2531	0.33	-0.8
3,041,039	+		Sama_2531	0.37	+3.1
3,041,066	-		Sama_2531	0.40	-1.0
3,041,067	+		Sama_2531	0.40	+0.1
3,041,067	+		Sama_2531	0.40	-0.2
3,041,067	+		Sama_2531	0.40	+0.8
3,041,067	+		Sama_2531	0.40	+0.1
3,041,067	+		Sama_2531	0.40	+0.2
3,041,068	-		Sama_2531	0.40	+0.4
3,041,068	-		Sama_2531	0.40	+0.1
3,041,081	+		Sama_2531	0.41	-1.0
3,041,087	+		Sama_2531	0.42	-0.4
3,041,191	+		Sama_2531	0.53	+1.1
3,041,263	+		Sama_2531	0.60	-0.5
3,041,320	+		Sama_2531	0.66	+0.7
3,041,320	+		Sama_2531	0.66	-0.2
3,041,321	-		Sama_2531	0.66	+0.2
3,041,408	+		Sama_2531	0.75	+0.8
3,041,477	+		Sama_2531	0.82	+0.4
3,041,477	+		Sama_2531	0.82	-0.0
3,041,478	-		Sama_2531	0.82	+1.4
3,041,478	-		Sama_2531	0.82	-1.1
3,041,532	+		Sama_2531	0.88	+1.4