Strain Fitness in Shewanella amazonensis SB2B around Sama_1693

Experiment: LB rep1 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t1
2,069,954	+		Sama_1692	0.58	+0.1
2,069,954	+		Sama_1692	0.58	+0.4
2,069,954	+		Sama_1692	0.58	+0.3
2,069,954	+		Sama_1692	0.58	-0.1
2,069,955	-		Sama_1692	0.58	+0.4
2,069,955	-		Sama_1692	0.58	-0.9
2,069,955	-		Sama_1692	0.58	-0.0
2,069,955	-		Sama_1692	0.58	+0.0
2,069,958	+		Sama_1692	0.58	+0.0
2,069,958	+		Sama_1692	0.58	+1.3
2,069,958	+		Sama_1692	0.58	-0.1
2,069,958	+		Sama_1692	0.58	+0.1
2,069,959	-		Sama_1692	0.58	-0.3
2,069,959	-		Sama_1692	0.58	+0.2
2,069,969	+		Sama_1692	0.59	+2.0
2,069,969	+		Sama_1692	0.59	-0.9
2,069,970	-		Sama_1692	0.59	-0.1
2,070,041	+		Sama_1692	0.62	+0.5
2,070,041	+		Sama_1692	0.62	-0.3
2,070,041	+		Sama_1692	0.62	-0.9
2,070,041	+		Sama_1692	0.62	+0.3
2,070,049	+		Sama_1692	0.63	-1.3
2,070,050	-		Sama_1692	0.63	-0.1
2,070,057	+		Sama_1692	0.63	+0.7
2,070,070	+		Sama_1692	0.64	+0.5
2,070,070	+		Sama_1692	0.64	-0.3
2,070,169	-		Sama_1692	0.68	+1.3
2,070,193	+		Sama_1692	0.69	-0.0
2,070,202	+		Sama_1692	0.70	+0.4
2,070,202	+		Sama_1692	0.70	+0.5
2,070,202	+		Sama_1692	0.70	-0.3
2,070,202	+		Sama_1692	0.70	+1.4
2,070,202	+		Sama_1692	0.70	-0.2
2,070,203	-		Sama_1692	0.70	+0.4
2,070,302	+		Sama_1692	0.75	+0.1
2,070,344	+		Sama_1692	0.77	+1.0
2,070,345	-		Sama_1692	0.77	+1.3
2,070,542	+		Sama_1692	0.86	-0.5
2,070,542	+		Sama_1692	0.86	+0.9
2,070,542	+		Sama_1692	0.86	+0.7
2,070,543	-		Sama_1692	0.86	+0.6
2,070,543	-		Sama_1692	0.86	+0.7
2,070,545	+		Sama_1692	0.86	-1.3
2,070,580	+		Sama_1692	0.88	+0.7
2,070,632	-				-0.5
2,070,735	+				+0.0
2,070,755	+				+0.3
2,070,809	+				+0.7
2,070,810	-				-1.9
2,070,893	+				+0.2
2,070,913	+				+0.1
2,070,914	-				+0.5
2,070,955	-				-0.6
2,071,060	-				-0.0
2,071,075	+				-0.1
2,071,092	+				+2.3
2,071,092	+				-0.9
2,071,092	+				-0.8
2,071,092	+				-0.9
2,071,120	-				+0.7
2,071,150	+				-0.3
2,071,150	+				+0.6
2,071,151	-				+0.8
2,071,183	+		Sama_1693	0.10	-0.7
2,071,184	-		Sama_1693	0.10	+0.7
2,071,184	-		Sama_1693	0.10	-0.0
2,071,232	+		Sama_1693	0.12	+0.9
2,071,475	+		Sama_1693	0.21	+0.5
2,071,475	+		Sama_1693	0.21	+0.7
2,071,479	+		Sama_1693	0.22	-0.7
2,071,480	-		Sama_1693	0.22	+0.6
2,071,480	-		Sama_1693	0.22	+0.4
2,071,486	+		Sama_1693	0.22	+1.5
2,071,487	-		Sama_1693	0.22	-0.3
2,071,544	+		Sama_1693	0.24	+0.3
2,071,544	+		Sama_1693	0.24	+2.3
2,071,545	-		Sama_1693	0.24	-0.7
2,071,545	-		Sama_1693	0.24	+0.1
2,071,545	-		Sama_1693	0.24	-0.9
2,071,545	-		Sama_1693	0.24	-2.1
2,071,545	-		Sama_1693	0.24	-0.6
2,071,606	-		Sama_1693	0.26	+0.7
2,071,728	+		Sama_1693	0.31	+0.9
2,071,788	-		Sama_1693	0.33	+0.3
2,071,788	-		Sama_1693	0.33	+2.3
2,071,798	-		Sama_1693	0.34	+1.3
2,071,853	+		Sama_1693	0.36	-0.3
2,071,854	-		Sama_1693	0.36	+1.7
2,071,854	-		Sama_1693	0.36	-0.7
2,071,854	-		Sama_1693	0.36	+2.1
2,071,854	-		Sama_1693	0.36	+0.9
2,071,854	-		Sama_1693	0.36	+1.7
2,071,909	+		Sama_1693	0.38	-1.9
2,072,079	+		Sama_1693	0.45	-0.3
2,072,209	-		Sama_1693	0.50	-0.9
2,072,209	-		Sama_1693	0.50	+0.1
2,072,224	+		Sama_1693	0.50	+2.0
2,072,297	+		Sama_1693	0.53	+0.9
2,072,298	-		Sama_1693	0.53	+0.0
2,072,299	+		Sama_1693	0.53	-0.3
2,072,408	+		Sama_1693	0.57	-1.9
2,072,409	-		Sama_1693	0.57	+0.1
2,072,430	+		Sama_1693	0.58	-1.9
2,072,493	-		Sama_1693	0.60	+0.1
2,072,493	-		Sama_1693	0.60	+0.3
2,072,595	+		Sama_1693	0.64	-0.1
2,072,596	-		Sama_1693	0.64	+1.5
2,072,747	+		Sama_1693	0.70	+0.7
2,072,748	-		Sama_1693	0.70	+0.7
2,072,830	+		Sama_1693	0.73	-0.8
2,072,831	-		Sama_1693	0.73	+1.3
2,072,915	+		Sama_1693	0.77	-0.6
2,072,916	-		Sama_1693	0.77	+0.1
2,073,024	+		Sama_1693	0.81	+2.3
2,073,024	+		Sama_1693	0.81	+0.7
2,073,025	-		Sama_1693	0.81	-0.1
2,073,065	-		Sama_1693	0.82	+0.7
2,073,121	-		Sama_1693	0.85	+0.4
2,073,139	+		Sama_1693	0.85	+0.4
2,073,139	+		Sama_1693	0.85	+0.2
2,073,156	+		Sama_1693	0.86	+1.8
2,073,157	-		Sama_1693	0.86	-0.9
2,073,163	-		Sama_1693	0.86	+1.3
2,073,231	+		Sama_1693	0.89	+0.3
2,073,284	+				+1.6
2,073,284	+				+1.5
2,073,284	+				+1.9
2,073,285	-				-1.1
2,073,285	-				+2.0
2,073,293	+				+0.4
2,073,321	+				+0.4
2,073,330	+				-1.3
2,073,331	-				-0.8
2,073,331	-				-0.7
2,073,446	+				-0.4
2,073,446	+				-0.3
2,073,447	-				+0.3
2,073,522	+				+0.1
2,073,570	-				+1.9
2,073,596	+				+0.4
2,073,596	+				+0.3
2,073,602	+				-0.6
2,073,602	+				+0.4
2,073,602	+				+0.7
2,073,602	+				+0.7
2,073,602	+				-0.3
2,073,602	+				-0.5
2,073,602	+				+1.7
2,073,602	+				+0.2
2,073,603	-				+0.7
2,073,603	-				-0.3
2,073,604	+				-0.2
2,073,604	+				+1.0
2,073,604	+				+0.7
2,073,606	+				+0.7
2,073,607	-				+0.4
2,073,607	-				+0.1
2,073,610	+				-0.7
2,073,669	-				+0.5
2,073,669	-				-0.7
2,073,712	+				+2.0
2,073,718	+				+1.6
2,073,747	+				-0.5
2,073,787	+				+0.6
2,073,808	+				-0.8
2,073,809	-				-0.7
2,073,828	+				-0.3
2,073,917	-				-0.5
2,073,971	+		Sama_1694	0.18	+0.9
2,073,971	+		Sama_1694	0.18	+0.6
2,074,009	+		Sama_1694	0.24	+0.5
2,074,028	-		Sama_1694	0.27	-0.2
2,074,028	-		Sama_1694	0.27	-0.0
2,074,030	+		Sama_1694	0.27	+0.2
2,074,031	-		Sama_1694	0.27	-2.6
2,074,049	+		Sama_1694	0.30	+0.0
2,074,050	-		Sama_1694	0.30	-0.1
2,074,052	+		Sama_1694	0.31	-0.3
2,074,052	+		Sama_1694	0.31	-0.9
2,074,052	+		Sama_1694	0.31	+1.0
2,074,052	+		Sama_1694	0.31	+0.7
2,074,052	+		Sama_1694	0.31	-0.3
2,074,053	-		Sama_1694	0.31	-1.3
2,074,134	-		Sama_1694	0.44	+0.7
2,074,312	+		Sama_1694	0.72	+0.4
2,074,313	-		Sama_1694	0.72	+1.3
2,074,316	+		Sama_1694	0.72	+0.7
2,074,316	+		Sama_1694	0.72	+0.9
2,074,380	-		Sama_1694	0.82	-0.7
2,074,391	+		Sama_1694	0.84	-0.2
2,074,392	-		Sama_1694	0.84	+0.3
2,074,431	-				-0.3
2,074,480	+				+0.4
2,074,480	+				-0.6
2,074,480	+				-0.5
2,074,488	+				-1.0
2,074,488	+				+0.4