Strain Fitness in Shewanella amazonensis SB2B around Sama_1589

Experiment: LB rep1 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t1
1,934,622	+		Sama_1588	0.52	-1.1
1,934,625	+		Sama_1588	0.53	+1.0
1,934,625	+		Sama_1588	0.53	+0.7
1,934,625	+		Sama_1588	0.53	+0.3
1,934,626	-		Sama_1588	0.53	-0.6
1,934,661	+		Sama_1588	0.54	-3.1
1,934,661	+		Sama_1588	0.54	-0.6
1,934,661	+		Sama_1588	0.54	-0.3
1,934,662	-		Sama_1588	0.54	-1.3
1,934,664	+		Sama_1588	0.54	+2.5
1,934,664	+		Sama_1588	0.54	+1.3
1,934,664	+		Sama_1588	0.54	-0.3
1,934,665	-		Sama_1588	0.55	+2.2
1,934,665	-		Sama_1588	0.55	-0.9
1,934,665	-		Sama_1588	0.55	+1.3
1,934,665	-		Sama_1588	0.55	+1.6
1,934,667	-		Sama_1588	0.55	-0.6
1,934,673	+		Sama_1588	0.55	+0.3
1,934,674	-		Sama_1588	0.55	+0.3
1,934,736	-		Sama_1588	0.58	-0.3
1,934,769	-		Sama_1588	0.60	-0.3
1,934,826	+		Sama_1588	0.62	+0.7
1,934,827	-		Sama_1588	0.62	+0.7
1,934,848	-		Sama_1588	0.63	-0.2
1,934,861	+		Sama_1588	0.64	-0.9
1,934,862	-		Sama_1588	0.64	+1.3
1,935,000	+		Sama_1588	0.71	+1.0
1,935,000	+		Sama_1588	0.71	+1.1
1,935,001	-		Sama_1588	0.71	+0.7
1,935,001	-		Sama_1588	0.71	-0.9
1,935,006	+		Sama_1588	0.71	+0.3
1,935,028	-		Sama_1588	0.72	+0.7
1,935,037	-		Sama_1588	0.72	-0.7
1,935,037	-		Sama_1588	0.72	-1.9
1,935,037	-		Sama_1588	0.72	-1.1
1,935,067	-		Sama_1588	0.74	+0.8
1,935,067	-		Sama_1588	0.74	+0.9
1,935,262	-		Sama_1588	0.83	+0.7
1,935,338	+		Sama_1588	0.87	-2.1
1,935,339	-		Sama_1588	0.87	+0.2
1,935,339	-		Sama_1588	0.87	+0.0
1,935,357	+		Sama_1588	0.88	+0.6
1,935,357	+		Sama_1588	0.88	+0.2
1,935,398	+		Sama_1588	0.90	+0.0
1,935,544	+				+0.4
1,935,544	+				+0.3
1,935,544	+				-0.5
1,935,544	+				+1.5
1,935,544	+				-0.6
1,935,545	-				+0.7
1,935,545	-				+0.6
1,935,545	-				+0.2
1,935,545	-				+0.3
1,935,545	-				+0.2
1,935,576	+				-0.1
1,935,576	+				+1.3
1,935,576	+				+0.2
1,935,590	+				+0.9
1,935,590	+				+0.3
1,935,591	-				+1.1
1,935,597	+				-0.6
1,935,597	+				+0.7
1,935,598	-				-0.7
1,935,598	-				+0.1
1,935,598	-				+0.1
1,935,598	-				+0.2
1,935,602	+				-0.9
1,935,602	+				-0.1
1,935,603	-				-1.3
1,935,606	+				+2.0
1,935,607	-				+0.3
1,935,617	-				+1.3
1,935,617	-				-0.3
1,935,814	-		Sama_1589	0.14	-0.1
1,935,844	-		Sama_1589	0.16	+1.0
1,935,844	-		Sama_1589	0.16	-0.9
1,935,864	+		Sama_1589	0.18	-1.3
1,935,864	+		Sama_1589	0.18	+0.9
1,935,864	+		Sama_1589	0.18	-0.3
1,935,865	-		Sama_1589	0.18	+0.4
1,935,865	-		Sama_1589	0.18	-0.1
1,935,865	-		Sama_1589	0.18	+1.4
1,935,881	+		Sama_1589	0.19	-0.5
1,935,882	-		Sama_1589	0.19	+0.7
1,935,894	+		Sama_1589	0.20	-0.3
1,935,894	+		Sama_1589	0.20	-0.9
1,935,894	+		Sama_1589	0.20	-0.3
1,935,895	-		Sama_1589	0.20	+1.0
1,935,939	+		Sama_1589	0.23	-2.6
1,936,006	-		Sama_1589	0.28	+0.4
1,936,063	+		Sama_1589	0.32	+0.5
1,936,082	+		Sama_1589	0.34	-0.6
1,936,131	-		Sama_1589	0.37	-0.3
1,936,131	-		Sama_1589	0.37	+0.9
1,936,202	+		Sama_1589	0.43	+0.1
1,936,202	+		Sama_1589	0.43	-0.9
1,936,202	+		Sama_1589	0.43	+0.3
1,936,202	+		Sama_1589	0.43	+1.0
1,936,203	-		Sama_1589	0.43	-0.3
1,936,395	+		Sama_1589	0.57	+0.7
1,936,395	+		Sama_1589	0.57	-0.1
1,936,395	+		Sama_1589	0.57	+2.4
1,936,396	-		Sama_1589	0.57	+0.7
1,936,396	-		Sama_1589	0.57	-0.3
1,936,396	-		Sama_1589	0.57	+1.7
1,936,397	+		Sama_1589	0.57	+0.3
1,936,398	-		Sama_1589	0.57	+1.1
1,936,488	+		Sama_1589	0.64	-0.1
1,936,493	+		Sama_1589	0.64	+0.1
1,936,493	+		Sama_1589	0.64	+0.3
1,936,493	+		Sama_1589	0.64	+0.8
1,936,494	-		Sama_1589	0.64	+0.7
1,936,570	-		Sama_1589	0.70	+0.9
1,936,596	+		Sama_1589	0.71	+0.1
1,936,597	-		Sama_1589	0.72	-0.2
1,936,704	+		Sama_1589	0.79	+0.3
1,936,705	-		Sama_1589	0.79	-0.3
1,936,764	+		Sama_1589	0.84	+0.9
1,936,764	+		Sama_1589	0.84	-0.2
1,936,765	-		Sama_1589	0.84	-0.5
1,936,765	-		Sama_1589	0.84	+1.8
1,936,765	-		Sama_1589	0.84	+1.3
1,936,785	+		Sama_1589	0.85	+0.3
1,936,815	+		Sama_1589	0.87	+1.0
1,936,914	+				+1.0
1,936,914	+				-0.8
1,936,914	+				+0.7
1,936,915	-				+0.2
1,936,915	-				+0.3
1,936,990	+				+0.3
1,936,990	+				+0.1
1,937,038	+				-1.3
1,937,038	+				+0.5
1,937,039	-				+0.7
1,937,050	-				-0.5
1,937,050	-				-0.6
1,937,050	-				+0.7
1,937,081	+				+0.3
1,937,082	-				+1.7
1,937,189	-		Sama_1590	0.14	+0.9
1,937,189	-		Sama_1590	0.14	-0.6
1,937,316	-		Sama_1590	0.26	-1.1
1,937,316	-		Sama_1590	0.26	+0.4
1,937,332	-		Sama_1590	0.28	+0.2
1,937,335	-		Sama_1590	0.28	+0.3
1,937,335	-		Sama_1590	0.28	+1.0
1,937,335	-		Sama_1590	0.28	+1.4
1,937,340	+		Sama_1590	0.29	+0.3
1,937,403	+		Sama_1590	0.35	-0.0
1,937,403	+		Sama_1590	0.35	-0.3
1,937,404	-		Sama_1590	0.35	+0.3
1,937,404	-		Sama_1590	0.35	+0.9
1,937,452	+		Sama_1590	0.40	-1.1
1,937,469	+		Sama_1590	0.41	-0.3
1,937,470	-		Sama_1590	0.42	+0.1
1,937,484	+		Sama_1590	0.43	-0.6
1,937,517	-		Sama_1590	0.46	+0.7
1,937,539	+		Sama_1590	0.48	+0.4
1,937,553	+		Sama_1590	0.50	-0.6
1,937,553	+		Sama_1590	0.50	-1.2
1,937,553	+		Sama_1590	0.50	-0.9
1,937,575	+		Sama_1590	0.52	-0.6
1,937,575	+		Sama_1590	0.52	-0.7
1,937,575	+		Sama_1590	0.52	-0.5
1,937,575	+		Sama_1590	0.52	+0.3
1,937,575	+		Sama_1590	0.52	+2.3
1,937,575	+		Sama_1590	0.52	-0.6
1,937,675	+		Sama_1590	0.62	-0.9
1,937,676	-		Sama_1590	0.62	-0.3
1,937,676	-		Sama_1590	0.62	+0.4
1,937,701	-		Sama_1590	0.64	-1.3
1,937,720	-		Sama_1590	0.66	+0.0
1,937,720	-		Sama_1590	0.66	+0.4
1,937,764	+		Sama_1590	0.71	+0.5
1,937,764	+		Sama_1590	0.71	+0.8
1,937,764	+		Sama_1590	0.71	+0.0
1,937,764	+		Sama_1590	0.71	+0.4
1,937,874	+		Sama_1590	0.82	-0.3
1,937,875	-		Sama_1590	0.82	-0.9
1,937,875	-		Sama_1590	0.82	-0.9
1,937,887	+		Sama_1590	0.83	+2.9
1,937,887	+		Sama_1590	0.83	+2.5
1,937,888	-		Sama_1590	0.83	-0.3
1,937,920	-		Sama_1590	0.86	-1.1
1,937,946	-		Sama_1590	0.89	-0.8