Strain Fitness in Shewanella amazonensis SB2B around Sama_1158

Experiment: LB rep1 t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t1
1,410,854	+		Sama_1157	0.37	+2.4
1,410,854	+		Sama_1157	0.37	+0.8
1,410,954	-		Sama_1157	0.44	+0.4
1,411,064	+		Sama_1157	0.51	+0.6
1,411,070	+		Sama_1157	0.52	+1.8
1,411,071	-		Sama_1157	0.52	+0.6
1,411,110	-		Sama_1157	0.54	-0.2
1,411,110	-		Sama_1157	0.54	-0.6
1,411,110	-		Sama_1157	0.54	-0.5
1,411,133	+		Sama_1157	0.56	+0.5
1,411,145	+		Sama_1157	0.57	-0.2
1,411,145	+		Sama_1157	0.57	-0.8
1,411,145	+		Sama_1157	0.57	-2.3
1,411,156	+		Sama_1157	0.58	-0.2
1,411,156	+		Sama_1157	0.58	+0.1
1,411,157	-		Sama_1157	0.58	+0.1
1,411,157	-		Sama_1157	0.58	-0.8
1,411,163	-		Sama_1157	0.58	+0.8
1,411,214	+		Sama_1157	0.62	+0.2
1,411,273	+		Sama_1157	0.66	-0.2
1,411,277	+		Sama_1157	0.66	-0.8
1,411,277	+		Sama_1157	0.66	+1.2
1,411,277	+		Sama_1157	0.66	+0.3
1,411,277	+		Sama_1157	0.66	-1.2
1,411,277	+		Sama_1157	0.66	+0.8
1,411,277	+		Sama_1157	0.66	-0.2
1,411,277	+		Sama_1157	0.66	+0.2
1,411,277	+		Sama_1157	0.66	+0.3
1,411,277	+		Sama_1157	0.66	+0.1
1,411,277	+		Sama_1157	0.66	-0.2
1,411,277	+		Sama_1157	0.66	+1.0
1,411,278	-		Sama_1157	0.66	+0.5
1,411,278	-		Sama_1157	0.66	+0.3
1,411,278	-		Sama_1157	0.66	-0.6
1,411,278	-		Sama_1157	0.66	-1.2
1,411,278	-		Sama_1157	0.66	-1.1
1,411,278	-		Sama_1157	0.66	-0.2
1,411,309	+		Sama_1157	0.68	-1.0
1,411,355	+		Sama_1157	0.71	-2.8
1,411,376	-		Sama_1157	0.73	-0.4
1,411,376	-		Sama_1157	0.73	+0.3
1,411,393	-		Sama_1157	0.74	-0.0
1,411,393	-		Sama_1157	0.74	-0.2
1,411,418	+		Sama_1157	0.76	+0.1
1,411,418	+		Sama_1157	0.76	+1.2
1,411,446	+		Sama_1157	0.77	-0.4
1,411,446	+		Sama_1157	0.77	-0.8
1,411,446	+		Sama_1157	0.77	-0.2
1,411,447	-		Sama_1157	0.78	+1.6
1,411,447	-		Sama_1157	0.78	+0.1
1,411,461	+		Sama_1157	0.79	-0.7
1,411,461	+		Sama_1157	0.79	-0.6
1,411,461	+		Sama_1157	0.79	+0.4
1,411,461	+		Sama_1157	0.79	+0.4
1,411,461	+		Sama_1157	0.79	-0.8
1,411,461	+		Sama_1157	0.79	+1.8
1,411,462	-		Sama_1157	0.79	-0.5
1,411,463	+		Sama_1157	0.79	-0.6
1,411,463	+		Sama_1157	0.79	-0.1
1,411,463	+		Sama_1157	0.79	-0.5
1,411,463	+		Sama_1157	0.79	-0.2
1,411,463	+		Sama_1157	0.79	-1.3
1,411,463	+		Sama_1157	0.79	+0.8
1,411,463	+		Sama_1157	0.79	+2.1
1,411,463	+		Sama_1157	0.79	-0.7
1,411,463	+		Sama_1157	0.79	-1.2
1,411,464	-		Sama_1157	0.79	-0.2
1,411,488	+		Sama_1157	0.80	-0.6
1,411,535	+		Sama_1157	0.84	-0.2
1,411,535	+		Sama_1157	0.84	-1.5
1,411,535	+		Sama_1157	0.84	+0.5
1,411,536	-		Sama_1157	0.84	-0.1
1,411,542	-		Sama_1157	0.84	-0.5
1,411,542	-		Sama_1157	0.84	-0.6
1,411,647	+				-1.0
1,411,647	+				+0.4
1,411,647	+				+0.4
1,411,648	-				+0.6
1,411,648	-				-0.0
1,411,697	+				-0.2
1,411,701	+				+0.8
1,411,702	-				+1.1
1,411,702	-				+2.1
1,411,702	-				+1.1
1,411,719	+				-1.6
1,411,719	+				-0.4
1,411,751	+				-0.5
1,411,752	-				-0.5
1,411,752	-				+1.0
1,411,754	+				-0.8
1,411,922	+		Sama_1158	0.10	+0.1
1,411,923	-		Sama_1158	0.11	-0.1
1,412,013	+		Sama_1158	0.20	+0.8
1,412,014	-		Sama_1158	0.21	+0.8
1,412,016	+		Sama_1158	0.21	-0.2
1,412,017	-		Sama_1158	0.21	-0.4
1,412,105	+		Sama_1158	0.30	+0.4
1,412,126	+		Sama_1158	0.33	+0.8
1,412,127	-		Sama_1158	0.33	+0.4
1,412,127	-		Sama_1158	0.33	-0.2
1,412,127	-		Sama_1158	0.33	+0.3
1,412,177	+		Sama_1158	0.38	-0.2
1,412,178	-		Sama_1158	0.38	+1.0
1,412,214	+		Sama_1158	0.42	-0.0
1,412,214	+		Sama_1158	0.42	-0.1
1,412,215	-		Sama_1158	0.43	+0.3
1,412,278	+		Sama_1158	0.49	-0.1
1,412,628	+		Sama_1158	0.88	+0.5
1,412,629	-		Sama_1158	0.88	+0.5
1,412,629	-		Sama_1158	0.88	+1.2
1,412,629	-		Sama_1158	0.88	+0.4
1,412,629	-		Sama_1158	0.88	+1.4
1,412,698	+				-1.5
1,412,699	-				+0.3
1,412,699	-				+0.4
1,412,738	+				+0.1
1,412,739	-				+0.0
1,412,742	+				+0.5
1,412,742	+				-1.1
1,412,742	+				-0.2
1,412,743	-				+0.1
1,412,743	-				+0.7
1,412,745	+				-0.1
1,412,765	+				-0.2
1,412,766	-				-0.2
1,412,766	-				+1.5
1,412,825	+				+0.3
1,412,825	+				+1.0
1,412,825	+				+0.5
1,412,825	+				+0.8
1,412,825	+				+0.6
1,412,825	+				-1.6
1,412,825	+				+0.8
1,412,826	-				+0.3
1,412,838	+				-0.9
1,412,909	+				+0.8
1,412,909	+				-0.2
1,412,910	-				+0.6
1,412,996	-				+1.6
1,412,996	-				-0.6
1,413,096	+		Sama_1159	0.10	+0.5
1,413,096	+		Sama_1159	0.10	-0.2
1,413,096	+		Sama_1159	0.10	-0.0
1,413,255	+		Sama_1159	0.18	+0.6
1,413,256	-		Sama_1159	0.18	+0.3
1,413,278	+		Sama_1159	0.20	+0.1
1,413,279	-		Sama_1159	0.20	+0.5
1,413,285	+		Sama_1159	0.20	-1.8
1,413,285	+		Sama_1159	0.20	-1.1
1,413,285	+		Sama_1159	0.20	-2.2
1,413,286	-		Sama_1159	0.20	+1.6
1,413,311	+		Sama_1159	0.21	+0.6
1,413,311	+		Sama_1159	0.21	-0.5
1,413,332	+		Sama_1159	0.22	+0.9
1,413,377	+		Sama_1159	0.25	-0.8
1,413,377	+		Sama_1159	0.25	+0.1
1,413,377	+		Sama_1159	0.25	-1.8
1,413,378	-		Sama_1159	0.25	-1.0
1,413,378	-		Sama_1159	0.25	+0.8
1,413,378	-		Sama_1159	0.25	+0.2
1,413,378	-		Sama_1159	0.25	-0.1
1,413,378	-		Sama_1159	0.25	-1.0
1,413,381	+		Sama_1159	0.25	-0.2
1,413,381	+		Sama_1159	0.25	+0.3
1,413,381	+		Sama_1159	0.25	+0.8
1,413,381	+		Sama_1159	0.25	+0.5
1,413,382	-		Sama_1159	0.25	+0.7
1,413,382	-		Sama_1159	0.25	+0.0
1,413,382	-		Sama_1159	0.25	+0.9
1,413,469	-		Sama_1159	0.29	-0.2
1,413,489	+		Sama_1159	0.30	+0.2
1,413,489	+		Sama_1159	0.30	+1.3
1,413,603	-		Sama_1159	0.36	+0.5
1,413,603	-		Sama_1159	0.36	-0.2
1,413,630	+		Sama_1159	0.38	-0.5