Strain Fitness in Shewanella amazonensis SB2B around Sama_0928

Experiment: LB rep1 t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntispH and Sama_0928 are separated by 228 nucleotidesSama_0928 and Sama_0929 are separated by 5 nucleotidesSama_0929 and Sama_0930 are separated by 12 nucleotides Sama_0927: ispH - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (RefSeq), at 1,120,174 to 1,121,115 ispH Sama_0928: Sama_0928 - type IV pilus assembly protein PilV (RefSeq), at 1,121,344 to 1,121,862 _0928 Sama_0929: Sama_0929 - type IV pilus assembly protein PilW (RefSeq), at 1,121,868 to 1,122,842 _0929 Sama_0930: Sama_0930 - type IV pilus assembly protein PilX (RefSeq), at 1,122,855 to 1,123,325 _0930 Position (kb) 1121 1122Strain fitness (log2 ratio) -2 -1 0 1 2at 1121.147 kb on + strandat 1121.177 kb on + strandat 1121.181 kb on + strandat 1121.181 kb on + strandat 1121.182 kb on - strandat 1121.183 kb on + strandat 1121.184 kb on - strandat 1121.184 kb on - strandat 1121.199 kb on + strandat 1121.207 kb on - strandat 1121.207 kb on - strandat 1121.207 kb on - strandat 1121.239 kb on - strandat 1121.239 kb on - strandat 1121.291 kb on + strandat 1121.399 kb on + strand, within Sama_0928at 1121.399 kb on + strand, within Sama_0928at 1121.399 kb on + strand, within Sama_0928at 1121.400 kb on - strand, within Sama_0928at 1121.400 kb on - strand, within Sama_0928at 1121.415 kb on + strand, within Sama_0928at 1121.416 kb on - strand, within Sama_0928at 1121.416 kb on - strand, within Sama_0928at 1121.489 kb on - strand, within Sama_0928at 1121.489 kb on - strand, within Sama_0928at 1121.489 kb on - strand, within Sama_0928at 1121.491 kb on + strand, within Sama_0928at 1121.491 kb on + strand, within Sama_0928at 1121.492 kb on - strand, within Sama_0928at 1121.492 kb on - strand, within Sama_0928at 1121.537 kb on + strand, within Sama_0928at 1121.538 kb on - strand, within Sama_0928at 1121.541 kb on + strand, within Sama_0928at 1121.541 kb on + strand, within Sama_0928at 1121.541 kb on + strand, within Sama_0928at 1121.541 kb on + strand, within Sama_0928at 1121.541 kb on + strand, within Sama_0928at 1121.541 kb on + strand, within Sama_0928at 1121.541 kb on + strand, within Sama_0928at 1121.541 kb on + strand, within Sama_0928at 1121.541 kb on + strand, within Sama_0928at 1121.542 kb on - strand, within Sama_0928at 1121.542 kb on - strand, within Sama_0928at 1121.542 kb on - strand, within Sama_0928at 1121.542 kb on - strand, within Sama_0928at 1121.542 kb on - strand, within Sama_0928at 1121.542 kb on - strand, within Sama_0928at 1121.542 kb on - strand, within Sama_0928at 1121.545 kb on + strand, within Sama_0928at 1121.545 kb on + strand, within Sama_0928at 1121.545 kb on + strand, within Sama_0928at 1121.545 kb on + strand, within Sama_0928at 1121.546 kb on - strand, within Sama_0928at 1121.546 kb on - strand, within Sama_0928at 1121.546 kb on - strand, within Sama_0928at 1121.546 kb on - strand, within Sama_0928at 1121.546 kb on - strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.557 kb on + strand, within Sama_0928at 1121.558 kb on - strand, within Sama_0928at 1121.583 kb on + strand, within Sama_0928at 1121.583 kb on + strand, within Sama_0928at 1121.583 kb on + strand, within Sama_0928at 1121.641 kb on + strand, within Sama_0928at 1121.641 kb on + strand, within Sama_0928at 1121.641 kb on + strand, within Sama_0928at 1121.642 kb on - strand, within Sama_0928at 1121.642 kb on - strand, within Sama_0928at 1121.642 kb on - strand, within Sama_0928at 1121.642 kb on - strand, within Sama_0928at 1121.679 kb on - strand, within Sama_0928at 1121.724 kb on + strand, within Sama_0928at 1121.758 kb on - strand, within Sama_0928at 1121.878 kb on + strandat 1121.879 kb on - strandat 1121.883 kb on - strandat 1121.883 kb on - strandat 1121.883 kb on - strandat 1121.923 kb on + strandat 1121.936 kb on + strandat 1121.936 kb on + strandat 1121.936 kb on + strandat 1121.936 kb on + strandat 1121.937 kb on - strandat 1121.937 kb on - strandat 1121.966 kb on + strand, within Sama_0929at 1121.966 kb on + strand, within Sama_0929at 1121.966 kb on + strand, within Sama_0929at 1121.967 kb on - strand, within Sama_0929at 1122.065 kb on + strand, within Sama_0929at 1122.089 kb on + strand, within Sama_0929at 1122.090 kb on - strand, within Sama_0929at 1122.107 kb on + strand, within Sama_0929at 1122.107 kb on + strand, within Sama_0929at 1122.112 kb on + strand, within Sama_0929at 1122.112 kb on + strand, within Sama_0929at 1122.113 kb on - strand, within Sama_0929at 1122.119 kb on + strand, within Sama_0929at 1122.119 kb on + strand, within Sama_0929at 1122.119 kb on + strand, within Sama_0929at 1122.119 kb on + strand, within Sama_0929at 1122.120 kb on - strand, within Sama_0929at 1122.130 kb on + strand, within Sama_0929at 1122.130 kb on + strand, within Sama_0929at 1122.173 kb on + strand, within Sama_0929at 1122.173 kb on + strand, within Sama_0929at 1122.173 kb on + strand, within Sama_0929at 1122.241 kb on + strand, within Sama_0929at 1122.242 kb on - strand, within Sama_0929at 1122.242 kb on - strand, within Sama_0929at 1122.242 kb on - strand, within Sama_0929at 1122.292 kb on + strand, within Sama_0929at 1122.293 kb on - strand, within Sama_0929at 1122.320 kb on + strand, within Sama_0929at 1122.328 kb on + strand, within Sama_0929at 1122.354 kb on + strand, within Sama_0929at 1122.354 kb on + strand, within Sama_0929at 1122.354 kb on + strand, within Sama_0929at 1122.354 kb on + strand, within Sama_0929at 1122.354 kb on + strand, within Sama_0929at 1122.354 kb on + strand, within Sama_0929at 1122.354 kb on + strand, within Sama_0929at 1122.355 kb on - strand, within Sama_0929at 1122.355 kb on - strand, within Sama_0929at 1122.355 kb on - strand, within Sama_0929at 1122.355 kb on - strand, within Sama_0929at 1122.404 kb on + strand, within Sama_0929at 1122.419 kb on + strand, within Sama_0929at 1122.419 kb on + strand, within Sama_0929at 1122.420 kb on - strand, within Sama_0929at 1122.439 kb on - strand, within Sama_0929at 1122.439 kb on - strand, within Sama_0929at 1122.439 kb on - strand, within Sama_0929at 1122.449 kb on + strand, within Sama_0929at 1122.449 kb on + strand, within Sama_0929at 1122.449 kb on + strand, within Sama_0929at 1122.449 kb on + strand, within Sama_0929at 1122.450 kb on - strand, within Sama_0929at 1122.450 kb on - strand, within Sama_0929at 1122.450 kb on - strand, within Sama_0929at 1122.453 kb on + strand, within Sama_0929at 1122.453 kb on + strand, within Sama_0929at 1122.453 kb on + strand, within Sama_0929at 1122.453 kb on + strand, within Sama_0929at 1122.453 kb on + strand, within Sama_0929at 1122.453 kb on + strand, within Sama_0929at 1122.453 kb on + strand, within Sama_0929at 1122.454 kb on - strand, within Sama_0929at 1122.454 kb on - strand, within Sama_0929at 1122.454 kb on - strand, within Sama_0929at 1122.454 kb on - strand, within Sama_0929at 1122.454 kb on - strand, within Sama_0929at 1122.456 kb on + strand, within Sama_0929at 1122.456 kb on + strand, within Sama_0929at 1122.457 kb on - strand, within Sama_0929at 1122.460 kb on + strand, within Sama_0929at 1122.460 kb on + strand, within Sama_0929at 1122.460 kb on + strand, within Sama_0929at 1122.461 kb on - strand, within Sama_0929at 1122.504 kb on - strand, within Sama_0929at 1122.504 kb on - strand, within Sama_0929at 1122.560 kb on - strand, within Sama_0929at 1122.568 kb on + strand, within Sama_0929at 1122.568 kb on + strand, within Sama_0929at 1122.568 kb on + strand, within Sama_0929at 1122.569 kb on - strand, within Sama_0929at 1122.570 kb on + strand, within Sama_0929at 1122.571 kb on - strand, within Sama_0929at 1122.632 kb on + strand, within Sama_0929at 1122.677 kb on - strand, within Sama_0929at 1122.716 kb on + strand, within Sama_0929at 1122.716 kb on + strand, within Sama_0929at 1122.716 kb on + strand, within Sama_0929at 1122.716 kb on + strand, within Sama_0929at 1122.723 kb on - strand, within Sama_0929at 1122.752 kb on + strandat 1122.758 kb on + strandat 1122.758 kb on + strandat 1122.758 kb on + strandat 1122.759 kb on - strandat 1122.759 kb on - strandat 1122.780 kb on + strandat 1122.780 kb on + strandat 1122.780 kb on + strandat 1122.780 kb on + strandat 1122.780 kb on + strandat 1122.780 kb on + strandat 1122.781 kb on - strandat 1122.781 kb on - strandat 1122.781 kb on - strandat 1122.782 kb on + strandat 1122.782 kb on + strandat 1122.782 kb on + strandat 1122.783 kb on - strandat 1122.783 kb on - strandat 1122.783 kb on - strandat 1122.788 kb on + strandat 1122.788 kb on + strandat 1122.788 kb on + strandat 1122.788 kb on + strandat 1122.788 kb on + strandat 1122.788 kb on + strandat 1122.788 kb on + strandat 1122.788 kb on + strandat 1122.789 kb on - strandat 1122.789 kb on - strandat 1122.789 kb on - strandat 1122.789 kb on - strandat 1122.789 kb on - strandat 1122.789 kb on - strandat 1122.789 kb on - strandat 1122.789 kb on - strandat 1122.833 kb on + strandat 1122.841 kb on - strandat 1122.841 kb on - strandat 1122.848 kb on + strandat 1122.849 kb on - strandat 1122.860 kb on + strandat 1122.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB rep1 t1
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1,121,147 + +0.5
1,121,177 + +0.4
1,121,181 + -0.3
1,121,181 + +0.3
1,121,182 - -0.8
1,121,183 + -0.8
1,121,184 - +1.6
1,121,184 - -0.2
1,121,199 + +0.3
1,121,207 - -0.2
1,121,207 - -1.2
1,121,207 - -0.7
1,121,239 - +0.2
1,121,239 - +0.2
1,121,291 + -0.2
1,121,399 + Sama_0928 0.11 +0.7
1,121,399 + Sama_0928 0.11 +0.9
1,121,399 + Sama_0928 0.11 +2.0
1,121,400 - Sama_0928 0.11 -0.2
1,121,400 - Sama_0928 0.11 +0.2
1,121,415 + Sama_0928 0.14 -0.2
1,121,416 - Sama_0928 0.14 -0.0
1,121,416 - Sama_0928 0.14 +1.0
1,121,489 - Sama_0928 0.28 -0.5
1,121,489 - Sama_0928 0.28 -0.5
1,121,489 - Sama_0928 0.28 -0.9
1,121,491 + Sama_0928 0.28 +0.7
1,121,491 + Sama_0928 0.28 +1.1
1,121,492 - Sama_0928 0.29 +0.6
1,121,492 - Sama_0928 0.29 +0.9
1,121,537 + Sama_0928 0.37 -1.2
1,121,538 - Sama_0928 0.37 +2.1
1,121,541 + Sama_0928 0.38 +0.8
1,121,541 + Sama_0928 0.38 +0.3
1,121,541 + Sama_0928 0.38 +1.0
1,121,541 + Sama_0928 0.38 +1.7
1,121,541 + Sama_0928 0.38 +0.8
1,121,541 + Sama_0928 0.38 +0.0
1,121,541 + Sama_0928 0.38 -0.8
1,121,541 + Sama_0928 0.38 +0.4
1,121,541 + Sama_0928 0.38 -0.0
1,121,542 - Sama_0928 0.38 +0.2
1,121,542 - Sama_0928 0.38 +0.5
1,121,542 - Sama_0928 0.38 +1.0
1,121,542 - Sama_0928 0.38 -0.6
1,121,542 - Sama_0928 0.38 -0.5
1,121,542 - Sama_0928 0.38 +0.8
1,121,542 - Sama_0928 0.38 +0.5
1,121,545 + Sama_0928 0.39 +0.2
1,121,545 + Sama_0928 0.39 -0.1
1,121,545 + Sama_0928 0.39 +0.4
1,121,545 + Sama_0928 0.39 +0.4
1,121,546 - Sama_0928 0.39 +0.1
1,121,546 - Sama_0928 0.39 +2.1
1,121,546 - Sama_0928 0.39 +0.5
1,121,546 - Sama_0928 0.39 -1.4
1,121,546 - Sama_0928 0.39 +0.1
1,121,557 + Sama_0928 0.41 -0.2
1,121,557 + Sama_0928 0.41 -0.1
1,121,557 + Sama_0928 0.41 +0.8
1,121,557 + Sama_0928 0.41 -0.2
1,121,557 + Sama_0928 0.41 +0.7
1,121,557 + Sama_0928 0.41 +1.8
1,121,557 + Sama_0928 0.41 +0.1
1,121,557 + Sama_0928 0.41 +0.0
1,121,557 + Sama_0928 0.41 -0.1
1,121,557 + Sama_0928 0.41 -2.4
1,121,558 - Sama_0928 0.41 +0.0
1,121,583 + Sama_0928 0.46 +0.0
1,121,583 + Sama_0928 0.46 -1.0
1,121,583 + Sama_0928 0.46 +1.2
1,121,641 + Sama_0928 0.57 +0.9
1,121,641 + Sama_0928 0.57 +1.5
1,121,641 + Sama_0928 0.57 +2.6
1,121,642 - Sama_0928 0.57 +0.1
1,121,642 - Sama_0928 0.57 +0.4
1,121,642 - Sama_0928 0.57 +0.2
1,121,642 - Sama_0928 0.57 +0.4
1,121,679 - Sama_0928 0.65 +0.3
1,121,724 + Sama_0928 0.73 -0.6
1,121,758 - Sama_0928 0.80 +0.6
1,121,878 + +0.2
1,121,879 - -0.2
1,121,883 - -0.1
1,121,883 - -0.2
1,121,883 - +0.4
1,121,923 + -1.2
1,121,936 + +0.3
1,121,936 + -0.3
1,121,936 + -0.7
1,121,936 + +1.2
1,121,937 - -1.2
1,121,937 - -0.9
1,121,966 + Sama_0929 0.10 +0.2
1,121,966 + Sama_0929 0.10 +0.2
1,121,966 + Sama_0929 0.10 +0.5
1,121,967 - Sama_0929 0.10 -0.2
1,122,065 + Sama_0929 0.20 +0.1
1,122,089 + Sama_0929 0.23 -0.5
1,122,090 - Sama_0929 0.23 +0.1
1,122,107 + Sama_0929 0.25 +1.0
1,122,107 + Sama_0929 0.25 -1.2
1,122,112 + Sama_0929 0.25 +0.3
1,122,112 + Sama_0929 0.25 -0.2
1,122,113 - Sama_0929 0.25 -0.9
1,122,119 + Sama_0929 0.26 +0.8
1,122,119 + Sama_0929 0.26 -0.1
1,122,119 + Sama_0929 0.26 +0.6
1,122,119 + Sama_0929 0.26 +0.5
1,122,120 - Sama_0929 0.26 +0.8
1,122,130 + Sama_0929 0.27 -1.4
1,122,130 + Sama_0929 0.27 +1.0
1,122,173 + Sama_0929 0.31 -0.6
1,122,173 + Sama_0929 0.31 +0.1
1,122,173 + Sama_0929 0.31 -0.8
1,122,241 + Sama_0929 0.38 -0.7
1,122,242 - Sama_0929 0.38 +0.8
1,122,242 - Sama_0929 0.38 -0.5
1,122,242 - Sama_0929 0.38 -0.4
1,122,292 + Sama_0929 0.43 +0.3
1,122,293 - Sama_0929 0.44 -1.2
1,122,320 + Sama_0929 0.46 -1.2
1,122,328 + Sama_0929 0.47 +0.2
1,122,354 + Sama_0929 0.50 -0.2
1,122,354 + Sama_0929 0.50 -0.8
1,122,354 + Sama_0929 0.50 +0.2
1,122,354 + Sama_0929 0.50 -1.2
1,122,354 + Sama_0929 0.50 +0.6
1,122,354 + Sama_0929 0.50 +0.1
1,122,354 + Sama_0929 0.50 +0.1
1,122,355 - Sama_0929 0.50 -0.2
1,122,355 - Sama_0929 0.50 -0.2
1,122,355 - Sama_0929 0.50 -0.0
1,122,355 - Sama_0929 0.50 +0.1
1,122,404 + Sama_0929 0.55 +0.5
1,122,419 + Sama_0929 0.57 -0.6
1,122,419 + Sama_0929 0.57 +0.9
1,122,420 - Sama_0929 0.57 +1.0
1,122,439 - Sama_0929 0.59 -0.6
1,122,439 - Sama_0929 0.59 +1.1
1,122,439 - Sama_0929 0.59 -0.6
1,122,449 + Sama_0929 0.60 -0.0
1,122,449 + Sama_0929 0.60 +0.5
1,122,449 + Sama_0929 0.60 +0.5
1,122,449 + Sama_0929 0.60 +0.5
1,122,450 - Sama_0929 0.60 -0.6
1,122,450 - Sama_0929 0.60 +1.2
1,122,450 - Sama_0929 0.60 -0.2
1,122,453 + Sama_0929 0.60 +0.0
1,122,453 + Sama_0929 0.60 +0.4
1,122,453 + Sama_0929 0.60 +0.4
1,122,453 + Sama_0929 0.60 +0.4
1,122,453 + Sama_0929 0.60 +0.3
1,122,453 + Sama_0929 0.60 +0.1
1,122,453 + Sama_0929 0.60 +0.1
1,122,454 - Sama_0929 0.60 +0.6
1,122,454 - Sama_0929 0.60 +0.2
1,122,454 - Sama_0929 0.60 -0.6
1,122,454 - Sama_0929 0.60 +1.4
1,122,454 - Sama_0929 0.60 -0.2
1,122,456 + Sama_0929 0.60 +0.4
1,122,456 + Sama_0929 0.60 -1.5
1,122,457 - Sama_0929 0.60 -0.6
1,122,460 + Sama_0929 0.61 -2.5
1,122,460 + Sama_0929 0.61 +0.3
1,122,460 + Sama_0929 0.61 -0.9
1,122,461 - Sama_0929 0.61 -0.2
1,122,504 - Sama_0929 0.65 +0.2
1,122,504 - Sama_0929 0.65 +0.4
1,122,560 - Sama_0929 0.71 +1.0
1,122,568 + Sama_0929 0.72 -0.2
1,122,568 + Sama_0929 0.72 -1.0
1,122,568 + Sama_0929 0.72 +0.1
1,122,569 - Sama_0929 0.72 +0.0
1,122,570 + Sama_0929 0.72 +0.9
1,122,571 - Sama_0929 0.72 -0.2
1,122,632 + Sama_0929 0.78 -1.2
1,122,677 - Sama_0929 0.83 -1.6
1,122,716 + Sama_0929 0.87 +0.1
1,122,716 + Sama_0929 0.87 +0.8
1,122,716 + Sama_0929 0.87 +1.2
1,122,716 + Sama_0929 0.87 +0.7
1,122,723 - Sama_0929 0.88 +0.8
1,122,752 + -0.2
1,122,758 + -1.0
1,122,758 + -1.0
1,122,758 + +1.4
1,122,759 - -0.2
1,122,759 - +2.1
1,122,780 + -0.2
1,122,780 + -0.2
1,122,780 + -0.2
1,122,780 + -0.6
1,122,780 + +1.8
1,122,780 + +0.3
1,122,781 - +1.4
1,122,781 - +0.8
1,122,781 - +0.1
1,122,782 + -1.2
1,122,782 + -1.8
1,122,782 + +1.7
1,122,783 - +0.2
1,122,783 - +0.2
1,122,783 - +0.5
1,122,788 + -0.1
1,122,788 + +0.5
1,122,788 + -0.4
1,122,788 + +0.1
1,122,788 + -0.5
1,122,788 + +1.0
1,122,788 + -0.5
1,122,788 + -0.8
1,122,789 - +0.9
1,122,789 - -1.0
1,122,789 - -1.0
1,122,789 - +0.9
1,122,789 - -0.2
1,122,789 - -0.4
1,122,789 - -1.8
1,122,789 - +0.6
1,122,833 + -0.4
1,122,841 - -0.6
1,122,841 - +0.5
1,122,848 + -0.2
1,122,849 - -1.2
1,122,860 + +1.8
1,122,861 - -1.0

Or see this region's nucleotide sequence