Experiment: LB rep1 t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0741 and Sama_0742 are separated by 225 nucleotides Sama_0742 and Sama_0743 are separated by 119 nucleotides Sama_0743 and Sama_0744 are separated by 147 nucleotides
Sama_0741: Sama_0741 - hemolysin-coregulated protein (uncharacterized)-like protein (RefSeq), at 908,537 to 909,067
_0741
Sama_0742: Sama_0742 - hypothetical protein (RefSeq), at 909,293 to 909,634
_0742
Sama_0743: Sama_0743 - hypothetical protein (RefSeq), at 909,754 to 910,173
_0743
Sama_0744: Sama_0744 - serine protease (RefSeq), at 910,321 to 915,498
_0744
Position (kb) 909
910
911 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 908.815 kb on + strand, within Sama_0741 at 908.815 kb on + strand, within Sama_0741 at 908.816 kb on - strand, within Sama_0741 at 908.838 kb on + strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.839 kb on - strand, within Sama_0741 at 908.966 kb on - strand, within Sama_0741 at 908.982 kb on + strand, within Sama_0741 at 908.982 kb on + strand, within Sama_0741 at 908.983 kb on - strand, within Sama_0741 at 909.032 kb on + strand at 909.037 kb on + strand at 909.037 kb on + strand at 909.037 kb on + strand at 909.037 kb on + strand at 909.037 kb on + strand at 909.038 kb on - strand at 909.038 kb on - strand at 909.081 kb on + strand at 909.081 kb on + strand at 909.081 kb on + strand at 909.082 kb on - strand at 909.082 kb on - strand at 909.120 kb on + strand at 909.121 kb on - strand at 909.121 kb on - strand at 909.121 kb on - strand at 909.127 kb on + strand at 909.128 kb on - strand at 909.128 kb on - strand at 909.142 kb on - strand at 909.142 kb on - strand at 909.204 kb on - strand at 909.204 kb on - strand at 909.239 kb on - strand at 909.254 kb on - strand at 909.254 kb on - strand at 909.288 kb on + strand at 909.288 kb on + strand at 909.289 kb on - strand at 909.289 kb on - strand at 909.289 kb on - strand at 909.309 kb on + strand at 909.310 kb on - strand at 909.310 kb on - strand at 909.310 kb on - strand at 909.373 kb on - strand, within Sama_0742 at 909.384 kb on + strand, within Sama_0742 at 909.385 kb on - strand, within Sama_0742 at 909.385 kb on - strand, within Sama_0742 at 909.385 kb on - strand, within Sama_0742 at 909.385 kb on - strand, within Sama_0742 at 909.499 kb on + strand, within Sama_0742 at 909.499 kb on + strand, within Sama_0742 at 909.500 kb on - strand, within Sama_0742 at 909.543 kb on - strand, within Sama_0742 at 909.543 kb on - strand, within Sama_0742 at 909.543 kb on - strand, within Sama_0742 at 909.619 kb on + strand at 909.619 kb on + strand at 909.619 kb on + strand at 909.619 kb on + strand at 909.619 kb on + strand at 909.619 kb on + strand at 909.619 kb on + strand at 909.619 kb on + strand at 909.620 kb on - strand at 909.620 kb on - strand at 909.719 kb on + strand at 909.748 kb on - strand at 909.802 kb on - strand, within Sama_0743 at 910.011 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.037 kb on + strand, within Sama_0743 at 910.038 kb on - strand, within Sama_0743 at 910.038 kb on - strand, within Sama_0743 at 910.038 kb on - strand, within Sama_0743 at 910.038 kb on - strand, within Sama_0743 at 910.038 kb on - strand, within Sama_0743 at 910.038 kb on - strand, within Sama_0743 at 910.043 kb on + strand, within Sama_0743 at 910.043 kb on + strand, within Sama_0743 at 910.043 kb on + strand, within Sama_0743 at 910.043 kb on + strand, within Sama_0743 at 910.043 kb on + strand, within Sama_0743 at 910.043 kb on + strand, within Sama_0743 at 910.043 kb on + strand, within Sama_0743 at 910.043 kb on + strand, within Sama_0743 at 910.044 kb on - strand, within Sama_0743 at 910.044 kb on - strand, within Sama_0743 at 910.044 kb on - strand, within Sama_0743 at 910.044 kb on - strand, within Sama_0743 at 910.044 kb on - strand, within Sama_0743 at 910.044 kb on - strand, within Sama_0743 at 910.044 kb on - strand, within Sama_0743 at 910.070 kb on + strand, within Sama_0743 at 910.070 kb on + strand, within Sama_0743 at 910.070 kb on + strand, within Sama_0743 at 910.071 kb on - strand, within Sama_0743 at 910.071 kb on - strand, within Sama_0743 at 910.071 kb on - strand, within Sama_0743 at 910.099 kb on + strand, within Sama_0743 at 910.099 kb on + strand, within Sama_0743 at 910.099 kb on + strand, within Sama_0743 at 910.099 kb on + strand, within Sama_0743 at 910.100 kb on - strand, within Sama_0743 at 910.100 kb on - strand, within Sama_0743 at 910.183 kb on + strand at 910.212 kb on + strand at 910.212 kb on + strand at 910.322 kb on + strand at 910.323 kb on - strand at 910.441 kb on + strand at 910.441 kb on + strand at 910.441 kb on + strand at 910.441 kb on + strand at 910.442 kb on - strand at 910.442 kb on - strand at 910.442 kb on - strand at 910.519 kb on + strand at 910.524 kb on + strand at 910.525 kb on - strand at 910.596 kb on + strand at 910.596 kb on + strand at 910.596 kb on + strand at 910.597 kb on - strand at 910.597 kb on - strand at 910.597 kb on - strand at 910.597 kb on - strand at 910.597 kb on - strand at 910.597 kb on - strand at 910.597 kb on - strand at 910.597 kb on - strand at 910.597 kb on - strand at 910.600 kb on + strand at 910.600 kb on + strand at 910.600 kb on + strand at 910.601 kb on - strand at 910.601 kb on - strand at 910.624 kb on - strand at 910.707 kb on + strand at 910.708 kb on - strand at 910.883 kb on + strand, within Sama_0744 at 910.883 kb on + strand, within Sama_0744 at 910.883 kb on + strand, within Sama_0744 at 910.884 kb on - strand, within Sama_0744 at 910.884 kb on - strand, within Sama_0744 at 910.930 kb on - strand, within Sama_0744 at 910.971 kb on + strand, within Sama_0744 at 910.972 kb on - strand, within Sama_0744 at 910.972 kb on - strand, within Sama_0744 at 910.972 kb on - strand, within Sama_0744 at 911.005 kb on + strand, within Sama_0744 at 911.005 kb on + strand, within Sama_0744 at 911.005 kb on + strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.006 kb on - strand, within Sama_0744 at 911.010 kb on + strand, within Sama_0744 at 911.124 kb on + strand, within Sama_0744 at 911.124 kb on + strand, within Sama_0744 at 911.124 kb on + strand, within Sama_0744 at 911.125 kb on - strand, within Sama_0744 at 911.125 kb on - strand, within Sama_0744 at 911.125 kb on - strand, within Sama_0744 at 911.171 kb on + strand, within Sama_0744 at 911.171 kb on + strand, within Sama_0744 at 911.172 kb on - strand, within Sama_0744
Per-strain Table
Position Strand Gene LocusTag Fraction LB rep1 t1 remove 908,815 + Sama_0741 0.52 -0.4 908,815 + Sama_0741 0.52 +0.1 908,816 - Sama_0741 0.53 +0.2 908,838 + Sama_0741 0.57 +0.2 908,839 - Sama_0741 0.57 -0.2 908,839 - Sama_0741 0.57 +0.3 908,839 - Sama_0741 0.57 +0.4 908,839 - Sama_0741 0.57 -0.1 908,839 - Sama_0741 0.57 +0.4 908,966 - Sama_0741 0.81 +0.3 908,982 + Sama_0741 0.84 +2.0 908,982 + Sama_0741 0.84 -0.8 908,983 - Sama_0741 0.84 +0.2 909,032 + +1.0 909,037 + -1.2 909,037 + -0.7 909,037 + +0.2 909,037 + -0.9 909,037 + -1.3 909,038 - +1.0 909,038 - -2.8 909,081 + +0.6 909,081 + +0.6 909,081 + +0.8 909,082 - +1.1 909,082 - +1.1 909,120 + +0.4 909,121 - -0.2 909,121 - +0.8 909,121 - +1.8 909,127 + +0.0 909,128 - -0.9 909,128 - +0.9 909,142 - -1.1 909,142 - -1.5 909,204 - +0.8 909,204 - +0.8 909,239 - +0.0 909,254 - +0.0 909,254 - -0.2 909,288 + +1.1 909,288 + -0.2 909,289 - +0.9 909,289 - +0.3 909,289 - -1.1 909,309 + +0.9 909,310 - -0.0 909,310 - +1.1 909,310 - +0.8 909,373 - Sama_0742 0.23 -0.6 909,384 + Sama_0742 0.27 +0.0 909,385 - Sama_0742 0.27 +0.8 909,385 - Sama_0742 0.27 -0.4 909,385 - Sama_0742 0.27 -0.6 909,385 - Sama_0742 0.27 -0.0 909,499 + Sama_0742 0.60 +0.4 909,499 + Sama_0742 0.60 +2.1 909,500 - Sama_0742 0.61 -0.0 909,543 - Sama_0742 0.73 -0.5 909,543 - Sama_0742 0.73 +0.1 909,543 - Sama_0742 0.73 -0.2 909,619 + +0.3 909,619 + +1.9 909,619 + +0.1 909,619 + +0.6 909,619 + +1.4 909,619 + -0.2 909,619 + -0.9 909,619 + -0.2 909,620 - +0.3 909,620 - +1.4 909,719 + -0.4 909,748 - +0.8 909,802 - Sama_0743 0.11 -0.0 910,011 + Sama_0743 0.61 -1.0 910,037 + Sama_0743 0.67 +1.4 910,037 + Sama_0743 0.67 +0.5 910,037 + Sama_0743 0.67 +1.4 910,037 + Sama_0743 0.67 -0.4 910,037 + Sama_0743 0.67 +0.4 910,037 + Sama_0743 0.67 +1.0 910,037 + Sama_0743 0.67 +0.1 910,037 + Sama_0743 0.67 -0.2 910,037 + Sama_0743 0.67 +0.7 910,037 + Sama_0743 0.67 +0.2 910,037 + Sama_0743 0.67 +1.1 910,037 + Sama_0743 0.67 +0.3 910,037 + Sama_0743 0.67 +0.4 910,037 + Sama_0743 0.67 +0.7 910,038 - Sama_0743 0.68 -1.8 910,038 - Sama_0743 0.68 +1.8 910,038 - Sama_0743 0.68 +0.1 910,038 - Sama_0743 0.68 +1.0 910,038 - Sama_0743 0.68 -0.2 910,038 - Sama_0743 0.68 -0.1 910,043 + Sama_0743 0.69 +0.1 910,043 + Sama_0743 0.69 -0.2 910,043 + Sama_0743 0.69 +0.3 910,043 + Sama_0743 0.69 -0.2 910,043 + Sama_0743 0.69 +0.3 910,043 + Sama_0743 0.69 +0.2 910,043 + Sama_0743 0.69 -0.4 910,043 + Sama_0743 0.69 +0.2 910,044 - Sama_0743 0.69 -0.5 910,044 - Sama_0743 0.69 +0.6 910,044 - Sama_0743 0.69 -0.4 910,044 - Sama_0743 0.69 +1.0 910,044 - Sama_0743 0.69 -0.2 910,044 - Sama_0743 0.69 +0.2 910,044 - Sama_0743 0.69 +3.0 910,070 + Sama_0743 0.75 -0.2 910,070 + Sama_0743 0.75 +0.8 910,070 + Sama_0743 0.75 +0.3 910,071 - Sama_0743 0.75 +3.4 910,071 - Sama_0743 0.75 -0.7 910,071 - Sama_0743 0.75 +0.0 910,099 + Sama_0743 0.82 +1.3 910,099 + Sama_0743 0.82 +0.1 910,099 + Sama_0743 0.82 +0.2 910,099 + Sama_0743 0.82 -0.8 910,100 - Sama_0743 0.82 +1.2 910,100 - Sama_0743 0.82 +0.4 910,183 + -0.2 910,212 + +0.2 910,212 + -0.2 910,322 + +0.1 910,323 - -0.2 910,441 + -0.1 910,441 + +0.4 910,441 + -1.2 910,441 + +0.2 910,442 - +0.6 910,442 - +0.8 910,442 - +0.3 910,519 + -0.6 910,524 + -0.6 910,525 - -1.8 910,596 + -0.1 910,596 + -0.5 910,596 + -0.2 910,597 - -0.9 910,597 - +0.3 910,597 - -1.1 910,597 - -0.9 910,597 - -0.7 910,597 - -0.8 910,597 - -1.2 910,597 - -0.2 910,597 - +0.2 910,600 + -0.3 910,600 + +0.2 910,600 + +1.6 910,601 - +1.0 910,601 - +1.8 910,624 - +1.1 910,707 + -0.2 910,708 - +0.7 910,883 + Sama_0744 0.11 +0.7 910,883 + Sama_0744 0.11 +0.6 910,883 + Sama_0744 0.11 -0.1 910,884 - Sama_0744 0.11 +0.6 910,884 - Sama_0744 0.11 -0.2 910,930 - Sama_0744 0.12 -0.5 910,971 + Sama_0744 0.13 +0.4 910,972 - Sama_0744 0.13 -1.8 910,972 - Sama_0744 0.13 -0.1 910,972 - Sama_0744 0.13 -0.5 911,005 + Sama_0744 0.13 -0.2 911,005 + Sama_0744 0.13 -1.3 911,005 + Sama_0744 0.13 -0.8 911,006 - Sama_0744 0.13 -0.2 911,006 - Sama_0744 0.13 -0.2 911,006 - Sama_0744 0.13 -0.4 911,006 - Sama_0744 0.13 -0.3 911,006 - Sama_0744 0.13 +0.0 911,006 - Sama_0744 0.13 +0.4 911,006 - Sama_0744 0.13 +0.2 911,006 - Sama_0744 0.13 +0.5 911,006 - Sama_0744 0.13 +0.7 911,006 - Sama_0744 0.13 -0.4 911,006 - Sama_0744 0.13 -0.6 911,010 + Sama_0744 0.13 +0.8 911,124 + Sama_0744 0.16 +0.7 911,124 + Sama_0744 0.16 -0.0 911,124 + Sama_0744 0.16 -0.5 911,125 - Sama_0744 0.16 -0.5 911,125 - Sama_0744 0.16 +0.1 911,125 - Sama_0744 0.16 -0.9 911,171 + Sama_0744 0.16 -0.2 911,171 + Sama_0744 0.16 +0.8 911,172 - Sama_0744 0.16 +0.8
Or see this region's nucleotide sequence