Strain Fitness in Marinobacter adhaerens HP15 around HP15_3973

Experiment: m.b. Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3972 and HP15_3973 are separated by 79 nucleotidesHP15_3973 and HP15_3974 overlap by 14 nucleotidesHP15_3974 and HP15_3975 overlap by 4 nucleotides HP15_3972: HP15_3972 - conserved hypothetical protein, at 4,201,598 to 4,202,257 _3972 HP15_3973: HP15_3973 - long-chain-fatty-acid-CoA ligase, at 4,202,337 to 4,204,427 _3973 HP15_3974: HP15_3974 - short chain dehydrogenase, at 4,204,414 to 4,205,196 _3974 HP15_3975: HP15_3975 - conserved hypothetical protein, secreted, at 4,205,193 to 4,205,813 _3975 Position (kb) 4202 4203 4204 4205Strain fitness (log2 ratio) -2 -1 0 1 2at 4201.402 kb on + strandat 4201.526 kb on + strandat 4201.531 kb on + strandat 4201.534 kb on - strandat 4201.534 kb on - strandat 4201.549 kb on - strandat 4201.629 kb on + strandat 4201.634 kb on + strandat 4201.637 kb on - strandat 4201.757 kb on + strand, within HP15_3972at 4201.765 kb on - strand, within HP15_3972at 4201.787 kb on + strand, within HP15_3972at 4201.978 kb on - strand, within HP15_3972at 4202.032 kb on - strand, within HP15_3972at 4202.139 kb on - strand, within HP15_3972at 4202.288 kb on - strandat 4202.382 kb on + strandat 4202.385 kb on - strandat 4202.385 kb on - strandat 4202.385 kb on - strandat 4202.390 kb on - strandat 4202.392 kb on + strandat 4202.400 kb on - strandat 4202.471 kb on - strandat 4202.508 kb on - strandat 4202.545 kb on - strandat 4202.555 kb on + strand, within HP15_3973at 4202.726 kb on + strand, within HP15_3973at 4202.736 kb on - strand, within HP15_3973at 4202.794 kb on - strand, within HP15_3973at 4202.794 kb on - strand, within HP15_3973at 4202.829 kb on + strand, within HP15_3973at 4202.885 kb on - strand, within HP15_3973at 4203.052 kb on - strand, within HP15_3973at 4203.076 kb on + strand, within HP15_3973at 4203.100 kb on + strand, within HP15_3973at 4203.129 kb on - strand, within HP15_3973at 4203.178 kb on - strand, within HP15_3973at 4203.232 kb on + strand, within HP15_3973at 4203.410 kb on - strand, within HP15_3973at 4203.472 kb on + strand, within HP15_3973at 4203.536 kb on + strand, within HP15_3973at 4203.567 kb on + strand, within HP15_3973at 4203.596 kb on + strand, within HP15_3973at 4203.602 kb on + strand, within HP15_3973at 4203.604 kb on - strand, within HP15_3973at 4203.649 kb on - strand, within HP15_3973at 4203.792 kb on + strand, within HP15_3973at 4203.835 kb on + strand, within HP15_3973at 4203.911 kb on + strand, within HP15_3973at 4203.971 kb on - strand, within HP15_3973at 4204.020 kb on - strand, within HP15_3973at 4204.039 kb on - strand, within HP15_3973at 4204.039 kb on - strand, within HP15_3973at 4204.066 kb on + strand, within HP15_3973at 4204.148 kb on - strand, within HP15_3973at 4204.222 kb on - strandat 4204.378 kb on + strandat 4204.640 kb on + strand, within HP15_3974at 4204.648 kb on - strand, within HP15_3974at 4204.660 kb on - strand, within HP15_3974at 4204.660 kb on - strand, within HP15_3974at 4204.665 kb on - strand, within HP15_3974at 4204.693 kb on + strand, within HP15_3974at 4204.715 kb on - strand, within HP15_3974at 4204.789 kb on + strand, within HP15_3974at 4204.797 kb on - strand, within HP15_3974at 4204.797 kb on - strand, within HP15_3974at 4204.810 kb on + strand, within HP15_3974at 4204.859 kb on + strand, within HP15_3974at 4204.897 kb on + strand, within HP15_3974at 4204.905 kb on - strand, within HP15_3974at 4204.928 kb on + strand, within HP15_3974at 4204.956 kb on - strand, within HP15_3974at 4204.978 kb on + strand, within HP15_3974at 4205.001 kb on - strand, within HP15_3974at 4205.126 kb on - strandat 4205.185 kb on - strandat 4205.253 kb on + strandat 4205.331 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.418 kb on - strand, within HP15_3975at 4205.418 kb on - strand, within HP15_3975at 4205.418 kb on - strand, within HP15_3975

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.008 mg/ml
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4,201,402 + +0.9
4,201,526 + +0.2
4,201,531 + -0.6
4,201,534 - +0.3
4,201,534 - -0.7
4,201,549 - +0.3
4,201,629 + +0.1
4,201,634 + +1.0
4,201,637 - -0.7
4,201,757 + HP15_3972 0.24 -1.3
4,201,765 - HP15_3972 0.25 +0.4
4,201,787 + HP15_3972 0.29 -0.4
4,201,978 - HP15_3972 0.58 +0.2
4,202,032 - HP15_3972 0.66 +2.0
4,202,139 - HP15_3972 0.82 -0.2
4,202,288 - -0.1
4,202,382 + +0.8
4,202,385 - -0.0
4,202,385 - +0.0
4,202,385 - -0.9
4,202,390 - -0.2
4,202,392 + +0.4
4,202,400 - +1.3
4,202,471 - -0.4
4,202,508 - +0.4
4,202,545 - -0.2
4,202,555 + HP15_3973 0.10 +0.6
4,202,726 + HP15_3973 0.19 -0.4
4,202,736 - HP15_3973 0.19 -1.9
4,202,794 - HP15_3973 0.22 +0.0
4,202,794 - HP15_3973 0.22 +0.4
4,202,829 + HP15_3973 0.24 +0.3
4,202,885 - HP15_3973 0.26 -0.1
4,203,052 - HP15_3973 0.34 -0.1
4,203,076 + HP15_3973 0.35 +0.4
4,203,100 + HP15_3973 0.36 +0.1
4,203,129 - HP15_3973 0.38 -0.6
4,203,178 - HP15_3973 0.40 -1.3
4,203,232 + HP15_3973 0.43 -0.1
4,203,410 - HP15_3973 0.51 -1.8
4,203,472 + HP15_3973 0.54 +0.2
4,203,536 + HP15_3973 0.57 +0.4
4,203,567 + HP15_3973 0.59 -0.5
4,203,596 + HP15_3973 0.60 +0.4
4,203,602 + HP15_3973 0.60 -0.4
4,203,604 - HP15_3973 0.61 +0.2
4,203,649 - HP15_3973 0.63 -0.3
4,203,792 + HP15_3973 0.70 +0.2
4,203,835 + HP15_3973 0.72 +0.7
4,203,911 + HP15_3973 0.75 +0.4
4,203,971 - HP15_3973 0.78 +0.2
4,204,020 - HP15_3973 0.80 +0.3
4,204,039 - HP15_3973 0.81 -0.6
4,204,039 - HP15_3973 0.81 +1.9
4,204,066 + HP15_3973 0.83 +0.4
4,204,148 - HP15_3973 0.87 +0.2
4,204,222 - -0.4
4,204,378 + +0.5
4,204,640 + HP15_3974 0.29 -0.5
4,204,648 - HP15_3974 0.30 +0.1
4,204,660 - HP15_3974 0.31 +0.9
4,204,660 - HP15_3974 0.31 -0.4
4,204,665 - HP15_3974 0.32 +0.1
4,204,693 + HP15_3974 0.36 +0.5
4,204,715 - HP15_3974 0.38 -0.1
4,204,789 + HP15_3974 0.48 +0.1
4,204,797 - HP15_3974 0.49 +0.7
4,204,797 - HP15_3974 0.49 -0.1
4,204,810 + HP15_3974 0.51 -0.5
4,204,859 + HP15_3974 0.57 +0.1
4,204,897 + HP15_3974 0.62 +0.7
4,204,905 - HP15_3974 0.63 +0.9
4,204,928 + HP15_3974 0.66 -0.0
4,204,956 - HP15_3974 0.69 -0.9
4,204,978 + HP15_3974 0.72 -0.5
4,205,001 - HP15_3974 0.75 +0.2
4,205,126 - +0.1
4,205,185 - +0.3
4,205,253 + -0.1
4,205,331 + HP15_3975 0.22 -1.6
4,205,410 + HP15_3975 0.35 +1.2
4,205,410 + HP15_3975 0.35 -1.2
4,205,410 + HP15_3975 0.35 -0.5
4,205,410 + HP15_3975 0.35 -0.8
4,205,410 + HP15_3975 0.35 -0.3
4,205,410 + HP15_3975 0.35 -0.2
4,205,418 - HP15_3975 0.36 -0.3
4,205,418 - HP15_3975 0.36 -0.2
4,205,418 - HP15_3975 0.36 -0.5

Or see this region's nucleotide sequence