Strain Fitness in Marinobacter adhaerens HP15 around HP15_3409

Experiment: m.b. Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3408 and HP15_3409 are separated by 24 nucleotidesHP15_3409 and HP15_3410 are separated by 219 nucleotides HP15_3408: HP15_3408 - conserved hypothetical protein, at 3,580,595 to 3,581,977 _3408 HP15_3409: HP15_3409 - cytochrome c554, at 3,582,002 to 3,582,337 _3409 HP15_3410: HP15_3410 - enoyl-CoA hydratase/isomerase family protein, at 3,582,557 to 3,583,660 _3410 Position (kb) 3582 3583Strain fitness (log2 ratio) -1 0 1 2at 3581.054 kb on - strand, within HP15_3408at 3581.056 kb on + strand, within HP15_3408at 3581.063 kb on + strand, within HP15_3408at 3581.202 kb on + strand, within HP15_3408at 3581.238 kb on + strand, within HP15_3408at 3581.323 kb on + strand, within HP15_3408at 3581.404 kb on + strand, within HP15_3408at 3581.435 kb on + strand, within HP15_3408at 3581.438 kb on - strand, within HP15_3408at 3581.613 kb on - strand, within HP15_3408at 3581.731 kb on + strand, within HP15_3408at 3581.819 kb on - strand, within HP15_3408at 3581.903 kb on + strandat 3581.993 kb on + strandat 3581.993 kb on + strandat 3582.001 kb on - strandat 3582.001 kb on - strandat 3582.001 kb on - strandat 3582.078 kb on + strand, within HP15_3409at 3582.183 kb on - strand, within HP15_3409at 3582.206 kb on + strand, within HP15_3409at 3582.237 kb on + strand, within HP15_3409at 3582.245 kb on - strand, within HP15_3409at 3582.411 kb on - strandat 3582.422 kb on + strandat 3582.422 kb on + strandat 3582.422 kb on + strandat 3582.425 kb on - strandat 3582.430 kb on - strandat 3582.442 kb on + strandat 3582.448 kb on + strandat 3582.497 kb on - strandat 3582.558 kb on + strandat 3582.569 kb on + strandat 3582.576 kb on - strandat 3582.593 kb on + strandat 3582.601 kb on - strandat 3582.629 kb on - strandat 3582.664 kb on + strandat 3582.672 kb on - strand, within HP15_3410at 3582.672 kb on - strand, within HP15_3410at 3582.673 kb on - strand, within HP15_3410at 3582.682 kb on - strand, within HP15_3410at 3582.877 kb on + strand, within HP15_3410at 3582.879 kb on + strand, within HP15_3410at 3582.887 kb on - strand, within HP15_3410at 3582.927 kb on - strand, within HP15_3410at 3582.927 kb on - strand, within HP15_3410at 3582.999 kb on - strand, within HP15_3410at 3583.046 kb on - strand, within HP15_3410at 3583.048 kb on + strand, within HP15_3410at 3583.055 kb on + strand, within HP15_3410at 3583.056 kb on - strand, within HP15_3410at 3583.063 kb on - strand, within HP15_3410at 3583.137 kb on - strand, within HP15_3410at 3583.165 kb on + strand, within HP15_3410at 3583.212 kb on - strand, within HP15_3410at 3583.222 kb on + strand, within HP15_3410

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.008 mg/ml
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3,581,054 - HP15_3408 0.33 -0.4
3,581,056 + HP15_3408 0.33 +0.0
3,581,063 + HP15_3408 0.34 +0.6
3,581,202 + HP15_3408 0.44 -0.0
3,581,238 + HP15_3408 0.46 -0.9
3,581,323 + HP15_3408 0.53 +0.2
3,581,404 + HP15_3408 0.58 +0.3
3,581,435 + HP15_3408 0.61 -0.1
3,581,438 - HP15_3408 0.61 +0.3
3,581,613 - HP15_3408 0.74 +0.9
3,581,731 + HP15_3408 0.82 +2.1
3,581,819 - HP15_3408 0.89 -0.5
3,581,903 + -0.2
3,581,993 + +0.6
3,581,993 + +0.4
3,582,001 - -0.3
3,582,001 - +0.7
3,582,001 - +0.1
3,582,078 + HP15_3409 0.23 -0.4
3,582,183 - HP15_3409 0.54 +0.2
3,582,206 + HP15_3409 0.61 +0.5
3,582,237 + HP15_3409 0.70 +1.3
3,582,245 - HP15_3409 0.72 -0.3
3,582,411 - +0.1
3,582,422 + +2.4
3,582,422 + -0.5
3,582,422 + -0.4
3,582,425 - -0.6
3,582,430 - +0.3
3,582,442 + +1.8
3,582,448 + +0.6
3,582,497 - -0.2
3,582,558 + -0.6
3,582,569 + -0.3
3,582,576 - -0.6
3,582,593 + -1.6
3,582,601 - +0.7
3,582,629 - +0.7
3,582,664 + +1.6
3,582,672 - HP15_3410 0.10 -0.2
3,582,672 - HP15_3410 0.10 -0.3
3,582,673 - HP15_3410 0.11 +0.6
3,582,682 - HP15_3410 0.11 +0.3
3,582,877 + HP15_3410 0.29 -0.0
3,582,879 + HP15_3410 0.29 -1.0
3,582,887 - HP15_3410 0.30 +0.1
3,582,927 - HP15_3410 0.34 +0.4
3,582,927 - HP15_3410 0.34 -0.1
3,582,999 - HP15_3410 0.40 +0.7
3,583,046 - HP15_3410 0.44 +0.4
3,583,048 + HP15_3410 0.44 +0.5
3,583,055 + HP15_3410 0.45 -0.3
3,583,056 - HP15_3410 0.45 +0.5
3,583,063 - HP15_3410 0.46 +0.1
3,583,137 - HP15_3410 0.53 +1.3
3,583,165 + HP15_3410 0.55 +0.4
3,583,212 - HP15_3410 0.59 -0.1
3,583,222 + HP15_3410 0.60 -0.4

Or see this region's nucleotide sequence