Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_928 and HP15_929 are separated by 45 nucleotides HP15_929 and HP15_930 are separated by 2 nucleotides
HP15_928: HP15_928 - extracellular ligand-binding receptor, at 941,702 to 942,907
_928
HP15_929: HP15_929 - branched-chain amino acid ABC transporter, permease protein, at 942,953 to 943,900
_929
HP15_930: HP15_930 - branched-chain amino acid transport permease, at 943,903 to 944,898
_930
Position (kb) 942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 941.970 kb on - strand, within HP15_928 at 942.083 kb on + strand, within HP15_928 at 942.194 kb on + strand, within HP15_928 at 942.264 kb on + strand, within HP15_928 at 942.268 kb on - strand, within HP15_928 at 942.311 kb on + strand, within HP15_928 at 942.311 kb on + strand, within HP15_928 at 942.354 kb on + strand, within HP15_928 at 942.389 kb on + strand, within HP15_928 at 942.395 kb on + strand, within HP15_928 at 942.426 kb on + strand, within HP15_928 at 942.474 kb on - strand, within HP15_928 at 942.511 kb on - strand, within HP15_928 at 942.511 kb on - strand, within HP15_928 at 942.572 kb on - strand, within HP15_928 at 942.617 kb on + strand, within HP15_928 at 942.706 kb on - strand, within HP15_928 at 942.706 kb on - strand, within HP15_928 at 942.733 kb on + strand, within HP15_928 at 942.779 kb on - strand, within HP15_928 at 942.805 kb on + strand at 942.813 kb on - strand at 942.813 kb on - strand at 942.824 kb on - strand at 942.859 kb on + strand at 942.867 kb on - strand at 942.885 kb on + strand at 942.946 kb on - strand at 943.043 kb on + strand at 943.094 kb on + strand, within HP15_929 at 943.094 kb on + strand, within HP15_929 at 943.094 kb on + strand, within HP15_929 at 943.094 kb on + strand, within HP15_929 at 943.102 kb on - strand, within HP15_929 at 943.183 kb on - strand, within HP15_929 at 943.253 kb on + strand, within HP15_929 at 943.309 kb on - strand, within HP15_929 at 943.309 kb on - strand, within HP15_929 at 943.351 kb on - strand, within HP15_929 at 943.389 kb on + strand, within HP15_929 at 943.401 kb on - strand, within HP15_929 at 943.406 kb on - strand, within HP15_929 at 943.414 kb on + strand, within HP15_929 at 943.414 kb on + strand, within HP15_929 at 943.414 kb on + strand, within HP15_929 at 943.422 kb on - strand, within HP15_929 at 943.430 kb on + strand, within HP15_929 at 943.463 kb on + strand, within HP15_929 at 943.470 kb on - strand, within HP15_929 at 943.674 kb on - strand, within HP15_929 at 943.713 kb on - strand, within HP15_929 at 943.744 kb on - strand, within HP15_929 at 943.772 kb on + strand, within HP15_929 at 943.806 kb on + strand at 943.938 kb on + strand at 944.156 kb on - strand, within HP15_930 at 944.169 kb on + strand, within HP15_930 at 944.193 kb on - strand, within HP15_930 at 944.193 kb on - strand, within HP15_930 at 944.235 kb on + strand, within HP15_930 at 944.243 kb on - strand, within HP15_930 at 944.297 kb on + strand, within HP15_930 at 944.550 kb on - strand, within HP15_930 at 944.772 kb on + strand, within HP15_930 at 944.827 kb on - strand at 944.866 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 941,970 - HP15_928 0.22 +3.0 942,083 + HP15_928 0.32 -0.2 942,194 + HP15_928 0.41 -1.3 942,264 + HP15_928 0.47 +0.4 942,268 - HP15_928 0.47 -0.6 942,311 + HP15_928 0.50 -0.2 942,311 + HP15_928 0.50 +0.4 942,354 + HP15_928 0.54 -1.6 942,389 + HP15_928 0.57 -1.2 942,395 + HP15_928 0.57 +1.6 942,426 + HP15_928 0.60 -0.9 942,474 - HP15_928 0.64 +0.4 942,511 - HP15_928 0.67 +1.2 942,511 - HP15_928 0.67 +0.5 942,572 - HP15_928 0.72 -1.7 942,617 + HP15_928 0.76 -0.2 942,706 - HP15_928 0.83 +1.9 942,706 - HP15_928 0.83 +0.3 942,733 + HP15_928 0.85 -0.1 942,779 - HP15_928 0.89 +0.1 942,805 + +1.0 942,813 - -0.1 942,813 - +0.9 942,824 - +0.7 942,859 + -1.0 942,867 - -0.4 942,885 + -0.1 942,946 - -0.1 943,043 + -1.8 943,094 + HP15_929 0.15 +0.0 943,094 + HP15_929 0.15 +1.1 943,094 + HP15_929 0.15 -1.5 943,094 + HP15_929 0.15 -1.4 943,102 - HP15_929 0.16 +0.3 943,183 - HP15_929 0.24 +0.2 943,253 + HP15_929 0.32 +1.6 943,309 - HP15_929 0.38 -0.8 943,309 - HP15_929 0.38 -0.2 943,351 - HP15_929 0.42 +2.7 943,389 + HP15_929 0.46 +1.2 943,401 - HP15_929 0.47 +0.5 943,406 - HP15_929 0.48 +1.0 943,414 + HP15_929 0.49 +0.9 943,414 + HP15_929 0.49 +1.2 943,414 + HP15_929 0.49 -0.7 943,422 - HP15_929 0.49 +0.3 943,430 + HP15_929 0.50 -0.3 943,463 + HP15_929 0.54 -2.0 943,470 - HP15_929 0.55 -2.0 943,674 - HP15_929 0.76 +1.1 943,713 - HP15_929 0.80 +0.6 943,744 - HP15_929 0.83 -0.4 943,772 + HP15_929 0.86 +0.6 943,806 + +0.0 943,938 + -0.7 944,156 - HP15_930 0.25 +0.6 944,169 + HP15_930 0.27 -0.8 944,193 - HP15_930 0.29 -0.7 944,193 - HP15_930 0.29 -0.1 944,235 + HP15_930 0.33 +0.2 944,243 - HP15_930 0.34 +0.9 944,297 + HP15_930 0.40 -2.3 944,550 - HP15_930 0.65 +1.7 944,772 + HP15_930 0.87 -3.5 944,827 - -2.9 944,866 + -0.5
Or see this region's nucleotide sequence