Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_852 and HP15_853 are separated by 18 nucleotides HP15_853 and HP15_854 are separated by 64 nucleotides HP15_854 and HP15_855 overlap by 1 nucleotides HP15_855 and HP15_856 are separated by 6 nucleotides
HP15_852: HP15_852 - MaoC-like dehydratase, at 869,898 to 870,368
_852
HP15_853: HP15_853 - RIO1/ZK632.3/MJ0444 family protein, at 870,387 to 871,283
_853
HP15_854: HP15_854 - conserved hypothetical protein, secreted, at 871,348 to 872,208
_854
HP15_855: HP15_855 - M23 peptidase domain protein, at 872,208 to 873,176
_855
HP15_856: HP15_856 - UspA domain protein, at 873,183 to 873,602
_856
Position (kb) 871
872
873 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 870.377 kb on + strand at 870.403 kb on - strand at 870.538 kb on + strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.584 kb on + strand, within HP15_853 at 870.820 kb on - strand, within HP15_853 at 870.858 kb on - strand, within HP15_853 at 870.911 kb on - strand, within HP15_853 at 870.944 kb on + strand, within HP15_853 at 871.038 kb on + strand, within HP15_853 at 871.046 kb on - strand, within HP15_853 at 871.084 kb on - strand, within HP15_853 at 871.144 kb on + strand, within HP15_853 at 871.157 kb on + strand, within HP15_853 at 871.302 kb on + strand at 871.313 kb on + strand at 871.320 kb on - strand at 871.345 kb on - strand at 871.394 kb on + strand at 871.394 kb on + strand at 871.428 kb on - strand at 871.509 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.557 kb on - strand, within HP15_854 at 871.557 kb on - strand, within HP15_854 at 871.562 kb on - strand, within HP15_854 at 871.566 kb on + strand, within HP15_854 at 871.567 kb on - strand, within HP15_854 at 871.574 kb on - strand, within HP15_854 at 871.757 kb on - strand, within HP15_854 at 871.798 kb on + strand, within HP15_854 at 871.798 kb on + strand, within HP15_854 at 871.848 kb on - strand, within HP15_854 at 871.931 kb on + strand, within HP15_854 at 872.043 kb on + strand, within HP15_854 at 872.048 kb on + strand, within HP15_854 at 872.165 kb on + strand at 872.165 kb on + strand at 872.272 kb on + strand at 872.520 kb on + strand, within HP15_855 at 872.671 kb on - strand, within HP15_855 at 872.684 kb on + strand, within HP15_855 at 872.684 kb on + strand, within HP15_855 at 872.856 kb on - strand, within HP15_855 at 873.014 kb on + strand, within HP15_855 at 873.031 kb on + strand, within HP15_855 at 873.052 kb on + strand, within HP15_855 at 873.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 870,377 + +0.7 870,403 - +0.8 870,538 + HP15_853 0.17 -1.3 870,582 - HP15_853 0.22 -0.1 870,582 - HP15_853 0.22 +0.8 870,584 + HP15_853 0.22 -1.2 870,820 - HP15_853 0.48 -0.9 870,858 - HP15_853 0.53 +0.9 870,911 - HP15_853 0.58 -0.6 870,944 + HP15_853 0.62 -0.5 871,038 + HP15_853 0.73 -0.8 871,046 - HP15_853 0.73 -1.5 871,084 - HP15_853 0.78 -1.4 871,144 + HP15_853 0.84 +1.1 871,157 + HP15_853 0.86 +1.2 871,302 + -0.5 871,313 + +1.7 871,320 - -0.7 871,345 - -1.3 871,394 + +1.6 871,394 + -0.6 871,428 - -1.5 871,509 - HP15_854 0.19 +0.2 871,511 - HP15_854 0.19 -0.8 871,511 - HP15_854 0.19 +1.2 871,511 - HP15_854 0.19 +1.5 871,557 - HP15_854 0.24 -0.0 871,557 - HP15_854 0.24 +1.1 871,562 - HP15_854 0.25 -0.7 871,566 + HP15_854 0.25 +1.7 871,567 - HP15_854 0.25 +1.8 871,574 - HP15_854 0.26 +3.6 871,757 - HP15_854 0.48 -0.2 871,798 + HP15_854 0.52 -0.8 871,798 + HP15_854 0.52 -0.4 871,848 - HP15_854 0.58 -1.3 871,931 + HP15_854 0.68 -0.2 872,043 + HP15_854 0.81 -0.6 872,048 + HP15_854 0.81 +0.1 872,165 + +0.8 872,165 + -1.1 872,272 + -2.2 872,520 + HP15_855 0.32 +0.2 872,671 - HP15_855 0.48 +1.0 872,684 + HP15_855 0.49 +0.4 872,684 + HP15_855 0.49 -1.1 872,856 - HP15_855 0.67 -0.7 873,014 + HP15_855 0.83 +0.3 873,031 + HP15_855 0.85 +0.1 873,052 + HP15_855 0.87 -1.1 873,151 + +0.7
Or see this region's nucleotide sequence