Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_843 and HP15_844 are separated by 3 nucleotides HP15_844 and HP15_845 are separated by 226 nucleotides HP15_845 and HP15_846 overlap by 4 nucleotides HP15_846 and HP15_847 are separated by 40 nucleotides HP15_847 and HP15_848 are separated by 112 nucleotides
HP15_843: HP15_843 - PhnA protein, at 862,138 to 862,476
_843
HP15_844: HP15_844 - protein containing DUF533, at 862,480 to 863,199
_844
HP15_845: HP15_845 - sensory box/GGDEF family protein, at 863,426 to 865,702
_845
HP15_846: HP15_846 - DR1885-like metal-binding protein, at 865,699 to 866,307
_846
HP15_847: HP15_847 - hypothetical protein, at 866,348 to 866,476
_847
HP15_848: HP15_848 - protein containing DUF980, at 866,589 to 867,419
_848
Position (kb) 863
864
865
866 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 862.522 kb on + strand at 862.573 kb on - strand, within HP15_844 at 862.633 kb on + strand, within HP15_844 at 862.644 kb on + strand, within HP15_844 at 862.665 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.682 kb on - strand, within HP15_844 at 862.796 kb on + strand, within HP15_844 at 862.841 kb on + strand, within HP15_844 at 862.841 kb on - strand, within HP15_844 at 863.000 kb on - strand, within HP15_844 at 863.092 kb on - strand, within HP15_844 at 863.106 kb on - strand, within HP15_844 at 863.132 kb on - strand at 863.146 kb on - strand at 863.153 kb on + strand at 863.161 kb on - strand at 863.184 kb on - strand at 863.372 kb on + strand at 863.380 kb on - strand at 863.463 kb on + strand at 863.499 kb on - strand at 863.504 kb on - strand at 863.564 kb on - strand at 863.578 kb on + strand at 863.627 kb on - strand at 863.695 kb on + strand, within HP15_845 at 863.794 kb on + strand, within HP15_845 at 863.896 kb on + strand, within HP15_845 at 863.903 kb on - strand, within HP15_845 at 863.904 kb on - strand, within HP15_845 at 864.000 kb on - strand, within HP15_845 at 864.002 kb on + strand, within HP15_845 at 864.024 kb on + strand, within HP15_845 at 864.092 kb on - strand, within HP15_845 at 864.138 kb on + strand, within HP15_845 at 864.168 kb on + strand, within HP15_845 at 864.168 kb on + strand, within HP15_845 at 864.245 kb on + strand, within HP15_845 at 864.256 kb on - strand, within HP15_845 at 864.324 kb on + strand, within HP15_845 at 864.345 kb on - strand, within HP15_845 at 864.503 kb on - strand, within HP15_845 at 864.636 kb on - strand, within HP15_845 at 864.637 kb on - strand, within HP15_845 at 864.750 kb on + strand, within HP15_845 at 864.769 kb on - strand, within HP15_845 at 864.852 kb on + strand, within HP15_845 at 864.860 kb on - strand, within HP15_845 at 864.990 kb on - strand, within HP15_845 at 865.332 kb on - strand, within HP15_845 at 865.419 kb on - strand, within HP15_845 at 865.524 kb on + strand at 865.586 kb on + strand at 865.591 kb on + strand at 865.630 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.704 kb on - strand at 865.833 kb on + strand, within HP15_846 at 866.072 kb on - strand, within HP15_846 at 866.164 kb on + strand, within HP15_846 at 866.189 kb on + strand, within HP15_846 at 866.372 kb on + strand, within HP15_847 at 866.380 kb on - strand, within HP15_847 at 866.445 kb on + strand, within HP15_847 at 866.558 kb on - strand at 866.633 kb on - strand at 866.641 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 862,522 + +1.7 862,573 - HP15_844 0.13 +0.3 862,633 + HP15_844 0.21 +0.9 862,644 + HP15_844 0.23 -2.7 862,665 - HP15_844 0.26 +0.9 862,670 - HP15_844 0.26 -1.5 862,670 - HP15_844 0.26 +0.3 862,682 - HP15_844 0.28 +0.1 862,796 + HP15_844 0.44 +0.3 862,841 + HP15_844 0.50 -0.6 862,841 - HP15_844 0.50 -0.0 863,000 - HP15_844 0.72 -0.5 863,092 - HP15_844 0.85 -0.3 863,106 - HP15_844 0.87 +0.5 863,132 - -1.3 863,146 - -0.3 863,153 + -1.1 863,161 - +0.3 863,184 - -1.5 863,372 + -1.6 863,380 - +1.7 863,463 + +0.7 863,499 - -0.7 863,504 - +2.4 863,564 - +0.1 863,578 + -0.0 863,627 - -2.2 863,695 + HP15_845 0.12 +1.6 863,794 + HP15_845 0.16 -1.4 863,896 + HP15_845 0.21 -0.4 863,903 - HP15_845 0.21 +0.0 863,904 - HP15_845 0.21 +0.1 864,000 - HP15_845 0.25 +1.9 864,002 + HP15_845 0.25 -0.7 864,024 + HP15_845 0.26 -1.1 864,092 - HP15_845 0.29 -1.0 864,138 + HP15_845 0.31 +1.9 864,168 + HP15_845 0.33 +1.1 864,168 + HP15_845 0.33 -1.1 864,245 + HP15_845 0.36 +0.7 864,256 - HP15_845 0.36 +0.8 864,324 + HP15_845 0.39 +0.3 864,345 - HP15_845 0.40 -1.3 864,503 - HP15_845 0.47 -0.4 864,636 - HP15_845 0.53 -0.3 864,637 - HP15_845 0.53 +0.7 864,750 + HP15_845 0.58 +0.5 864,769 - HP15_845 0.59 -1.3 864,852 + HP15_845 0.63 +0.9 864,860 - HP15_845 0.63 +0.7 864,990 - HP15_845 0.69 +1.3 865,332 - HP15_845 0.84 -0.3 865,419 - HP15_845 0.88 +0.7 865,524 + -0.1 865,586 + +0.0 865,591 + +4.3 865,630 + +0.1 865,655 + -1.0 865,655 + +0.7 865,655 + -0.9 865,704 - +0.1 865,833 + HP15_846 0.22 -0.3 866,072 - HP15_846 0.61 -0.6 866,164 + HP15_846 0.76 +2.3 866,189 + HP15_846 0.80 +0.5 866,372 + HP15_847 0.19 +0.3 866,380 - HP15_847 0.25 +0.4 866,445 + HP15_847 0.75 -0.2 866,558 - -3.0 866,633 - +0.8 866,641 + -0.8
Or see this region's nucleotide sequence