Experiment: m.b. Paraquat dichloride 0.0075 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_673 and HP15_674 overlap by 11 nucleotides HP15_674 and HP15_675 are separated by 117 nucleotides HP15_675 and HP15_676 are separated by 11 nucleotides HP15_676 and HP15_677 are separated by 3 nucleotides HP15_677 and HP15_678 are separated by 91 nucleotides
HP15_673: HP15_673 - phage terminase GpA, at 692,685 to 694,646
_673
HP15_674: HP15_674 - phage-related packaging protein, at 694,636 to 695,154
_674
HP15_675: HP15_675 - conserved hypothetical protein, at 695,272 to 695,703
_675
HP15_676: HP15_676 - N-acetylmuramoyl-L-alanine amidase, at 695,715 to 696,140
_676
HP15_677: HP15_677 - hypothetical protein, at 696,144 to 696,452
_677
HP15_678: HP15_678 - conserved hypothetical protein, at 696,544 to 697,077
_678
Position (kb) 695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 694.387 kb on + strand, within HP15_673 at 694.405 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.461 kb on - strand at 694.480 kb on + strand at 694.546 kb on + strand at 694.546 kb on + strand at 694.549 kb on - strand at 694.554 kb on - strand at 694.554 kb on - strand at 694.556 kb on + strand at 694.641 kb on - strand at 694.666 kb on - strand at 694.728 kb on - strand, within HP15_674 at 694.730 kb on + strand, within HP15_674 at 694.745 kb on + strand, within HP15_674 at 694.749 kb on - strand, within HP15_674 at 694.826 kb on + strand, within HP15_674 at 694.834 kb on - strand, within HP15_674 at 694.961 kb on + strand, within HP15_674 at 695.043 kb on - strand, within HP15_674 at 695.123 kb on - strand at 695.128 kb on - strand at 695.143 kb on - strand at 695.167 kb on - strand at 695.227 kb on + strand at 695.233 kb on + strand at 695.233 kb on - strand at 695.250 kb on - strand at 695.271 kb on + strand at 695.320 kb on - strand, within HP15_675 at 695.322 kb on + strand, within HP15_675 at 695.426 kb on - strand, within HP15_675 at 695.532 kb on + strand, within HP15_675 at 695.537 kb on + strand, within HP15_675 at 695.571 kb on - strand, within HP15_675 at 695.603 kb on + strand, within HP15_675 at 695.609 kb on + strand, within HP15_675 at 695.617 kb on - strand, within HP15_675 at 695.659 kb on - strand, within HP15_675 at 695.710 kb on + strand at 695.766 kb on - strand, within HP15_676 at 695.801 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.914 kb on - strand, within HP15_676 at 695.957 kb on + strand, within HP15_676 at 695.957 kb on - strand, within HP15_676 at 696.085 kb on + strand, within HP15_676 at 696.092 kb on + strand, within HP15_676 at 696.235 kb on + strand, within HP15_677 at 696.292 kb on - strand, within HP15_677 at 696.311 kb on - strand, within HP15_677 at 696.322 kb on - strand, within HP15_677 at 696.412 kb on - strand, within HP15_677 at 696.419 kb on - strand, within HP15_677 at 696.501 kb on + strand at 696.520 kb on - strand at 696.549 kb on + strand at 696.549 kb on + strand at 696.557 kb on - strand at 696.635 kb on + strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.0075 mg/ml remove 694,387 + HP15_673 0.87 +1.0 694,405 - HP15_673 0.88 +0.8 694,410 - HP15_673 0.88 -1.1 694,410 - HP15_673 0.88 -1.9 694,410 - HP15_673 0.88 -0.0 694,461 - -1.9 694,480 + +0.3 694,546 + -0.8 694,546 + +1.5 694,549 - -0.1 694,554 - -0.2 694,554 - +0.0 694,556 + +0.2 694,641 - +0.0 694,666 - +0.1 694,728 - HP15_674 0.18 -1.8 694,730 + HP15_674 0.18 -0.1 694,745 + HP15_674 0.21 +1.0 694,749 - HP15_674 0.22 +0.2 694,826 + HP15_674 0.37 -0.8 694,834 - HP15_674 0.38 +2.3 694,961 + HP15_674 0.63 +0.3 695,043 - HP15_674 0.78 +1.6 695,123 - +0.6 695,128 - -2.1 695,143 - -0.3 695,167 - +1.6 695,227 + -0.1 695,233 + -0.6 695,233 - +1.2 695,250 - +0.1 695,271 + -1.0 695,320 - HP15_675 0.11 -1.5 695,322 + HP15_675 0.12 -0.0 695,426 - HP15_675 0.36 +0.3 695,532 + HP15_675 0.60 -0.4 695,537 + HP15_675 0.61 +0.5 695,571 - HP15_675 0.69 -1.2 695,603 + HP15_675 0.77 +1.7 695,609 + HP15_675 0.78 +0.2 695,617 - HP15_675 0.80 -0.3 695,659 - HP15_675 0.90 +1.3 695,710 + -2.3 695,766 - HP15_676 0.12 -0.8 695,801 + HP15_676 0.20 -3.2 695,860 + HP15_676 0.34 -0.9 695,860 + HP15_676 0.34 -1.9 695,914 - HP15_676 0.47 -1.2 695,957 + HP15_676 0.57 +1.6 695,957 - HP15_676 0.57 -1.2 696,085 + HP15_676 0.87 -1.2 696,092 + HP15_676 0.88 -0.8 696,235 + HP15_677 0.29 -0.3 696,292 - HP15_677 0.48 +1.0 696,311 - HP15_677 0.54 +0.6 696,322 - HP15_677 0.58 -0.8 696,412 - HP15_677 0.87 +0.2 696,419 - HP15_677 0.89 +0.1 696,501 + +0.4 696,520 - -0.2 696,549 + -1.3 696,549 + +0.4 696,557 - -1.3 696,635 + HP15_678 0.17 +1.5 696,641 - HP15_678 0.18 -1.5 696,641 - HP15_678 0.18 -1.9 696,641 - HP15_678 0.18 -0.4
Or see this region's nucleotide sequence